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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… ( CRAGE ). CRAGE enables scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the … relatives with the BGCs, JGI scientists could relieve BGCs from their former genetic repression, enabling scientists to … example, a group of JGI users led by Steven Hallam at the University of British Columbia, recently deployed CRAGE to …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship internship program between the DOE Joint Genome Institute (JGI) and University of California (UC), Merced. What started with 2 … all the work that went into this program was the feedback from the graduate student interns; “it changed what I want …
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JGI-KBase Panel at SACNAS
Nov. 2: Getting Credit for Scientific Contributions of Any Size What is considered to be a scientific … students (and their mentors) how to begin establishing a professional presence through getting credit for any scientific contribution they make, whether as part of a course or internship, and before ever publishing a …
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Virus-Microbe Interactions of Mud Island Mangroves
Ian Rambo, a graduate student in Brett Baker’s lab at the University of Texas at Austin, will defend his dissertation. Some of his research was conducted at the JGI through the DOE …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … changing planet. In this short audio production, we’ll hear from Ed Hall, an ecologist at Colorado State University in Fort Collins. He’s part of a JGI-supported …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … changing planet. In this short audio production, we’ll hear from Karolina Heyduk, an evolutionary plant biologist at the University of Hawai’i at Mānoa. I recently caught up with …
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JGI@25: The Little Alga That Could
… sort of genomic hackathon to annotate a genome. (Hear more from on Chlamy from Sabeeha Merchant in this episode of … The reference genome is cited in roughly 10% of all since-released publications on green algae. “The Chlamy genome … on the Chlamy pan-genome and Marina Cvetkovska of the University of Ottawa on the multi-omics of arctic-growing …
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Extracting the Secrets of Secondary Metabolites
… survival, may now be easier to characterize following a proof-of-concept study in which researchers paired CRISPR and … to insects. It is carried by an infectious nematode and releases toxins into the insect’s bloodstream that quickly … CRAGE allows for the transplanting of these BGCs from one organism into an alternate host via a landing pad …
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SPRUCE-ing Up Science
… his backyard in Tennessee — the birds are chirping and a soft breeze ripples through the trees in his backyard. Originally from northern California and one of the first students to … the HudsonAlpha Institute for Biotechnology, and Duke University, published their research related to how bacteria …
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Green Algae Reveal One mRNA Encodes Many Proteins
… a single protein. Recently reported in the Proceedings of the National Academy of Sciences , a team of researchers has found numerous … the article. The research team included scientists at the University of California (UC), Berkeley, UCLA, UC Davis, …
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Yasuo Yoshikuni
Dr. Yasuo Yoshikuni has been head of the DNA Synthesis Science Program since 2015. The mission … more.  … B.E. in Biological Science and Technology, Tokyo University of Science, Japan ( summa cum laude ) Ph.D. in … Discovering untapped biochemistry in microorganisms from hidden corners. Nature Review Microbiology , 2022 …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
Bacterial enzymes play second fiddle to those from fungi when it comes to breaking down tough plant … analyzing the enzymes present in the complex organic matrix of the forest floor, a team of researchers have found that … are not specific enough for a microbial community like that from a temperate coniferous forest floor — which Baldrian’s …
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