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iPHoP: A Matchmaker for Phages and their Hosts
… microbial communities. One day, these phages could boost plant-microbe interactions, nutrient cycling, or carbon … pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, … Research Program awarded under UC-DOE Prime Contract DE-AC02-05CH11231. The work conducted by the U.S. Department of …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… More than 20 UC Merced students have contributed to the research of 13 … Ben Cole, a project scientist in Visel’s Genomics of Plant-Microbial Interactions Group who has mentored several … intern): Accepted a post-doctoral position with the Plant and Microbe Interaction group at Oak Ridge National …
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2022 Progress Report
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Three Join the JGI User Executive Committee
… influence biogeochemical cycles in soils and sediments and plant-microbial interactions in crops. He has been a PI or … Greenham stepped down at the end of her term. In late 2023, the JGI launched a solicitation for nominations for …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… Understanding (MoU) signed between UDE and Berkeley Lab in 2022, the delegation from UDE familiarized themselves with the …
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Introducing New Members of the JGI User Executive Committee
… terms. The JGI solicited UEC nominations in late 2022 and the election period concluded on Jan. 6, 2023. With …
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Promoting the Power of Viral Metagenomics
… Microbiome Data Science Group led by Kyrpides. Since early 2020, people all over the world have been forced to confront …
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Party in the Rhizosphere
… are the VIPs. They’re feasting on the compounds that plants secrete through their roots, creating a lively zone …
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Pinning Down a Piece of Photosynthesis
… The products of photosynthesis are easy to point out. Plants, algae and cyanobacteria create the air we breathe … and longtime JGI collaborator Sabeeha Merchant’s group. In 2011, they inventoried a swath of blueprints to find parts … initial target was a family of proteins that appeared in plants and algae and contained a similar region —  a domain …
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Effects of Polar Light Cycle on Microbial Food Web
… was supported by the Australian Research Council (DP150100244) and the Australian Antarctic Science program (project … of the US Department of Energy under contract no. DE-AC02-05CH11231. Computational analyses at UNSW Sydney were performed on …
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How to Target a Microbial Needle within a Community Haystack
… User Facility, is supported under Contract No. DE-AC02-05CH11231. This study was funded by the Max Planck Society. …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to …
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