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… , JGI’s User Programs deputy and head of the Microbial Systems group through the  DOE Office of Science Graduate … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …

… proteins. PhycoCosm’s built-in connection to the DOE Systems Biology Knowledgebase (KBase) also allows … microbial and metagenome datasets, MycoCosm for comparative analysis of fungal genomes, and Phytozome for comparing …

… tackle when it comes to breaking down a plant for energy: Cellulose, hemicellulose and lignin, cumulatively called … lignocellulose, are the primary components of hardy cell walls. It’s the cellulose and hemicellulose that eventually … fungi (Neocallimastix californiae) on sorghum, switchgrass and poplar, then monitored changes to the plants’ …

… about how microbes have adapted to thrive in polar ecosystems. The work by Cavicchioli’s team sheds light on the … growth because they had larger genome sizes and their cells were not observed to associate with host cells. In the  Proceedings of the National Academy of …

… in 2007, she switched gears from metagenomics to single-cell genomics, which is now her primary interest and … Member for Bigelow Laboratory for Ocean Sciences Single Cell Genomics Center (2013-current) Science Advisory Board … Woyke et al. 2006. Symbiosis insights through metagenomic analysis of a microbial consortium. Nature 443, 950-955.   … …

… but it also requires a deep understanding of biological systems. The JGI strategic plan lays out how users and the … insights into a vast range of organisms and ecosystems. These kinds of data could open opportunities along … scientific investigations of biological and environmental systems.”  The user facility’s new plan goes beyond …

Eric’s research is focusing on the development of new computational approaches to identify and …

Antonio’s research is focusing on the development of new methods for the identification and …

… bioenergy feedstocks, algae are tiny but mighty. An analysis in the 2017 Bioeconomy Report estimated that the … in Igor Grigoriev’s team at the JGI led the multi-omics analysis effort for a more complete picture. The team … to learn more about which genes expression patterns. The analysis led to the identification of several transcription …

Microbial Genomes & Microbiomes (IMG/M) database. In their analysis, the team found that bacterial isolate genomes … representation in the public databases. In a similar analysis for Archaea , the team found that isolate genomes … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …

They wanted to learn about the genes implicated in the development of breast and prostate cancer, and Crohn’s … J., Terry, A. et al. The DNA sequence and comparative analysis of human chromosome 5. Nature. 431, 268–274 (2004). … Martin, J., Han, C., Gordon, L. et al. The sequence and analysis of duplication-rich human chromosome 16 . Nature. …