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The Surprising Structure of a Shrub Willow Sex Chromosome
… The shrub willow differentiates into males and females, a development conferred by its sex chromosomes. In humans, … 31561123001, 31500502, 41871044), National Key Research and Development Program of China (2017YFC0505203, …
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Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies
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Honey Bee Gut Microbiota Divvy Up Dinner
… absorbable solution of sugars. But pollen contains plant cell walls, which have complex, branching chains of … that interested the authors was that an evolutionary analysis of  Bifidobacterium strains in honey bees and … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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A call for caution in the biological interpretation of viral auxiliary metabolic genes
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HaploCharmer: a Snakemake workflow for read-scale haplotype calling adapted to polyploids
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UC Merced Interns Reflect on Their JGI Summer Projects
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JGI & KBase at PAG XXVII
… from the DOE Joint Genome Institute (JGI) and the  DOE Systems Biology Knowledgebase (KBase) will be at Booth 509. … Research (BER) Plant Genomic Science on current and ongoing developments toward integrative biology. Researchers who are … sequence information to BER-funded activities of plant systems that make use of these resources will present on …
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Webinar: PhycoCosm Tutorial
… of sequenced algal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Why … A:  For every genome that we sequence, we provide full analysis (assemble, annotate, work on initial analysis) and share data in PhycoCosm. For genomes not …
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Graduate Students Get Thesis Research Opportunity at the JGI
… JGI’s User Programs deputy and head of the Microbial Systems group. Tringe’s research group focuses on the roles … develop the omics methodologies into workflows with the DOE Systems Biology Knowledgebase (KBase) , in collaboration … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Enlarging Windows into Understanding Gene Functions
… interest. Nature Methods paper coauthor Lee did the initial development of a streamlined workflow that reduces the time … could be useful for industrial biofuel production, and multicellular development. “DAP-Seq is the main source of information in … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Genome analysis of ‘Candidatus Ancillula trichonymphae’, first representative of a deep‐branching clade of Bifidobacteriales, strengthens evidence for convergent evolution in flagellate endosymbionts
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Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure
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