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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and … insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … Lab’s Biological Systems and Engineering), to assign microbial taxa (Andrew Tritt of CRD and, independently, Ying …
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Extracting the Secrets of Secondary Metabolites
… CRAGE-CRISPR combo helps further demystify biosynthetic gene clusters.  The Science Microbial secondary metabolites, those molecules not … survival, may now be easier to characterize following a proof-of-concept study in which researchers paired CRISPR and … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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Genome Sequences of Industrially Relevant Saccharomyces cerevisiae Strain M3707, Isolated from a Sample of Distillers Yeast and Four Haploid Derivatives
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, … he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the development of numerous genomic resources that fostered the widespread …
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference … C. reinhardtii on PhycoCosm … C. zofingiensis on Phytozome …
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How Maize Makes An Antibiotic Cocktail
… Maize produces a family of compounds that protects it against … corn variety and protect maize by fending off fungal and microbial infections. Scientists had assumed that maize … revealed that just a handful of enzymes are needed to transform zealexins and related precursors into a bonanza of …
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You Can Move, But You Can’t Hide
… Researchers at the JGI develop a tool to quickly and accurately … to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. … in soils and water. MGEs like viruses and plasmids drive microbial processes and evolution. This is because MGEs can …
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI researchers for … Merced in Spring 2019.) Mentor: Ben Cole, Genomics of Plant-Microbial Interactions What effect has your summer …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen … Area are also co-located in the IGB. Vision The vision of the U.S. Department of Energy (DOE) Joint Genome …
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Annual Meeting 2027
…   Save the Date: March 16–18, 2027 The next JGI Annual Meeting will be held in … this page as further details become available. Sign up for our newsletter to receive updates.    … Stefani Ferreira , JGI Administrative and Logistics Support  …
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JGI announces 2024 New Investigator portfolio
… The JGI is eager to work and share our tools with a widening circle of researchers. That’s why each year we look for novel … of desert grasslands to the metabolic savviness of microbial ecosystems at the forest floor and along ocean …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… Across four forests, researchers have leveraged data from the 1000 … registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species decompose debris, mobilize nutrients from that … related to clean energy generation and environmental characterization and cleanup. The JGI provides integrated …
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