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A One-Stop Shop for Analyzing Algal Genomes
… The PhycoCosm data portal allows anyone to freely investigate the genes of … Genomes and Microbiomes (IMG/M) system for microbial and metagenome datasets, MycoCosm for comparative analysis of …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… From August 21-23, 2023, attendees joined the JGI Annual Genomics of Energy & … address of the 2023 JGI Annual Meeting. As the JGI’s Metagenome Science Program Head, Emiley Eloe-Fadrosh, … that the ambiguity was exactly her point. “Things have one or another function that completely depends on the …
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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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Draft Genome Assemblies of Ionic Liquid-Resistant Yarrowia lipolytica PO1f and Its Superior Evolved Strain, YlCW001
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Contrasting Community Assembly Forces Drive Microbial Structural and Potential Functional Responses to Precipitation in an Incipient Soil System
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A Chromosome-Scale Genome Assembly of the Flax Rust Fungus Reveals the Two Unusually Large Effector Proteins, AvrM3 and AvrN.
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Survey of Setaria's natural diversity reveals seed dispersal in wild … a senior author of the paper. “This paper is the first one to survey a huge amount of natural diversity and say, … Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed …
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DNA Synthesis Program
… The JGI’s DNA Synthesis Program supports a wide range of projects, from … and other bioenergy solutions.  The program has been a pioneering effort in functional genomics since 2012, with a … critical energy and environmental challenges. Through innovative research in synthetic biology, the program enables the …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… we’ve been revisiting a number of notable achievements that showcase our collaborations and capabilities to enable … plants can’t run away, they’ve evolved these really tough cell wall materials that keep microbes — and the enzymes … they have also snowballed into more collaborations. One of O’Malley’s former postdocs, Kevin Solomon — now an …
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UC Merced Interns Reflect on Their JGI Summer Projects
… Over the course of eight weeks this past summer, 10 students from UC Merced worked closely with JGI scientists on research projects that contribute to the larger mission of the U.S. Department … Check out the short videos highlighting the exciting work done by the 2020 cohort of JGI-UC Merced interns .   by: …
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JGI@25: Solving the Mystery of the Missing Oil
… 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable … Ridge National Laboratory Governor’s Chair, noted that one of the biggest questions was the mystery of the missing … at Berkeley Lab. Over the next decade, the JGI’s single cell genomics and metagenomics capabilities were harnessed …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… able to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) … suggest that fungi are breaking down plant fibers, like cellulose and lignin. Bacteria, on the other hand, appear to … near the roots. But the deeper down and away from the roots one goes, the more bacteria show up. The data underscore …
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