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Correlation-based network analysis combined with machine learning techniques highlight the role of the GABA shunt in Brachypodium sylvaticum freezing tolerance
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Comparative genomic analysis of the gut bacterium Bifidobacterium longum reveals loci susceptible to deletion during pure culture growth
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Predicting the chemical space of fungal polyketides by phylogeny-based bioinformatics analysis of polyketide synthase-nonribosomal peptide synthetase and its modification enzymes
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Meta-omics datasets show that CRISPR-Cas systems determine mutualism or … how these hosts and hitchhikers coexist is key for understanding their impact on wider ecosystems, but …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
Bacterial enzymes play second fiddle to those from fungi when … down tough plant fibers. The Science Walk in a temperate forest filled with Norway spruce trees, and microbial … Czech Academy of Sciences first needed to build a detailed database on the denizens in the soil. While large protein …
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Eelgrass Proves to Be Much Younger Than We Thought
Recent study shows eelgrass has been around about 2.5 million years less than … — including the eelgrass genome assembly that enabled analysis of the whole genome duplication event — … by a fellowship to M.K. in the Helmholtz School for Marine Data Science (grant number HIDSS-0005) and by a grant to J. …
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John Vogel
Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, … mutant collections, transformation technology, epigenetic analysis techniques) and utilizing these resources to … Visiting Fellowship Australia … Education … Selected Publications … Awards and Service …
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2022 Progress Report
Pictured is a timelapse of the Integrative Genomics Building (IGB) seen … the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
In the summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome … also holds a joint appointment with the University of California, Berkeley. Nowadays, Session is an Assistant … came up with this new method, Session mentioned that the analysis for determining the evolutionary history of …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … it, viruses are most likely in your system and in your data, and they’re probably influencing the microbes there,” … challenges, characterizing viruses is a key step. For decades, though, many viruses have been somewhat …
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Genome analysis of ‘Candidatus Ancillula trichonymphae’, first representative of a deep‐branching clade of Bifidobacteriales, strengthens evidence for convergent evolution in flagellate endosymbionts
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Refinement of the “Candidatus Accumulibacter” genus based on metagenomic analysis of biological nutrient removal (BNR) pilot-scale plants operated with reduced aeration
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