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An Automated Tool for Assessing Virus Data Quality
… the genomes of these viruses and associate them with their microbial hosts. However, assembling viral genomes from … from the host organism. As reported in Nature Biotechnology , a team from the U.S. Department of Energy (DOE) … from IMG/VR , a database that is part of the Integrated Microbial Genomes & Microbiomes (IMG/M) suite, as well as …
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An Integrated Dataset to Understand Ecosystem Interaction
… the dynamic relationship between poplar trees and their microbial partners. The Science To help better understand … the tree’s production as a biofuel feedstock. Public accessibility to the data made available through this … and small molecules produced by the trees and associated microbial communities. This revealed key metabolic pathways …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… said Susannah Tringe, JGI User Programs Deputy. “These new CSP projects accelerate our efforts to characterize … diCenzo’s proposal is also notable as he had an accepted new investigator proposal last year, and he noted that the … call. “I am convinced that the experience writing the New Investigator proposal, and receiving feedback from …
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Gotta Catch 'Em Gall
Berkeley and the Joint BioEnergy Institute) are looking for new ways to engineer plants. So they’ve looked into wasps …
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10 From JGI on the 2019 Highly Cited Researchers List
Animal Science and Molecular Biology & Genetics categories Microbial Systems research group lead and User Programs … for defining virus data quality. Reported in Nature Biotechnology, the work brought together virus experts, … led the plant team at the HudsonAlpha Institute for Biotechnology that worked on an updated reference genome for …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… in developing and maintaining the JGI’s  Integrated Microbial Genomics and Microbiomes (IMG/M) system. The … of metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for identifying mobile genetic elements ( Nature Biotechnology , 2024), and iPHoP , an integrated machine …
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The Fungi That Survive In Antarctica
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Training the Next Generation of Talent
New Graduate Internship Program Builds Bridges Between DOE … forward to opening the graduate internship program to a new pool of applicants. “This is the first iteration of this …
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Genome Sequence of Oceanicola sp. Strain MCTG156(1a), Isolated from a Scottish Coastal Phytoplankton Net Sample
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JGI Early Career Researchers Featured in mSystems Special Issue
… sequence reads to link mobile elements such as plasmids to microbial host cells. In a separate article, research …
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JGI announces 2024 Functional Genomics awardees
… to reveal metabolic pathways that could ultimately enable new or more efficient biotechnologies.  Below find a list of …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
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