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Improving the Cacao Genome and Phytozome
… for comparative purposes on the latest version of the JGI plant portal Phytozome at  phytozome-next.JGI.doe.gov . One of the goals in updating the genome … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of … forwarded (e.g.,  https://phytozome.jgi.doe.gov/pz/portal.html#!info?alias=Org_Ptrichocarpa will be forwarded to  … versions at  https://phytozome-next.jgi.doe.gov/jbrowse/index.html How can I access the genome data that was …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Implementation Lead at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … author on the paper and computational biologist at the JGI. “We had to work really hard to make them work for the … beyond plants. Currently, this technology is available to JGI users for studies on organisms with smaller genomes, …
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Gut Fungi: Unexpected Source of Novel Chemicals
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … National Laboratory. The team’s research at both the JGI and EMSL was enabled by the Facilities Integrating … the fungi were making. So, Trent Northen , head of the JGI Metabolomics Technology Group, with scientists Ben Bowen …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … 2021, which aims in part to build off of this work. Former JGI postdoctoral scholar Margot Bezrutczyk collaborated … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Open Frameworks Training the Next Generation of Scientists
… faculty and researchers at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility, and the DOE Systems Biology Knowledgebase (KBase). The JGI and KBase are both supported by the DOE Biological and … data. Undergraduate educators are partnering with the JGI and KBase to tap into their existing infrastructures and …
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Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica
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Tracing the Evolution of Shiitake Mushrooms
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … conducted by the US Department of Energy JGI (https://ror.org/04xm1d337), a DOE Office of Science …
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Building Sphagnum Genomic Resources
… carbon cycling impact.   The Science Enabled by the JGI’s Community Science Program (CSP), researchers are … draft genome for  S. fallax is already available on the  JGI plant portal Phytozome , and the S. magellanicum genome … P23117-B17, P25111-B22, P26392-B20, and I1628-B22), the JGI (CSP 605), the German Research Foundation (DFG, PE …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … the way to seed but prevent the seeds from falling,” said JGI Plant Program head Jeremy Schmutz , who is also a … mapping back to identify candidate genes.”  Through the JGI’s Community Science Program , sequences of several …
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Fungus Fuels Tree Growth
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, through its  … Ecosystems (ARBRE) (ANR-11-LABX 0002 01 to F. Martin), JGI Community sequencing program project (CSP570, …
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Georg Rath
… has been leading the Systems Infrastructure Team at the JGI since 2020. Before joining the JGI, he has been working on the boundary of life science and … to fit the needs of the dynamic environment that is JGI. Infrastructure built by his team is unbureaucratic and …
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