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… technologies.  The exponential growth of DNA sequencing data, coupled with recent computational technology advances … from the human gut microbiome. Nature Biotechnol.  39(1):105-114. Schulz F, et al. (2020) Giant virus diversity and … Reveal Thousands of Small, Novel Genes. Cell 178(5):1245-1259 Nayfach S, et al, (2019) New insights from uncultivated …

Kanwar spends part of his time assisting JGI users by processing their single cell samples using our … throughput pipeline. He also explores new methods for creating sequencing libraries and optimizing various processes. …

RIViT-seq technology could speed up associating transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory protein. … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

As set out in the JGI Five-Year Strategic Plan – “Beyond Basepairs, A Vision for Integrative … to the resources and disciplines advanced by the JGI, we seek to inspire more students to enter the science, …

… library approach to tuning gene expression in metabolic pathways. Compared to the traditional way, which leverages an … variations of essential genes in metabolic networks that were missed using traditional approaches. This novel … systems, expanding the technologies available for other JGI users outside the realm of bioenergy optimization. …

In this episode, undergraduates adopt genomes that the JGI sequenced, but never published in the …

… and ‘omics techniques to experimentally determine that Nanohaloarchaeota are symbionts, rather than … and the biosphere), including the global carbon cycle. The JGI is sequencing large numbers of microbes and microbial …

Getting Credit for Scientific Contributions of Any Size What is considered to be a scientific contribution? This session will demonstrate to students (and their mentors) how to begin … for students through the Department of Energy-funded National Labs, User Facilities and Programs, and introduce …

Back in 2011, JGI-supported researchers published a paper in the journal … metagenomics to identify over 27,000 microbial genes. The data from that study is now used across California State University …

… show which microbes are handling specific nutrients, or what they're doing with those nutrients, and even how quickly. … catch: SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible … researchers. Ultimately, the goal is to generate SIP data that can be useful to multiple teams and analyses. This …