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Understanding Wildfire Recovery, Starting in Soil
… begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, … across a spectrum of burned soils. By connecting microbial genes with functions useful for forest recovery, this study … interact; beyond bacteria, these samples harbored fungal genomes, including a novel Leotiomycetes species and …
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Role of diversity-generating retroelements for regulatory pathway tuning in cyanobacteria
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Extracting the Secrets of Secondary Metabolites
CRAGE-CRISPR combo helps further demystify biosynthetic gene clusters.  The Science Microbial secondary metabolites, … survival, may now be easier to characterize following a proof-of-concept study in which researchers paired CRISPR and …
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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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Control of Bacterial Sulfite Detoxification by Conserved and Species-Specific Regulatory Circuits
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The regulatory and transcriptional landscape associated with carbon utilization in a filamentous fungus
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Three Join the JGI User Executive Committee
… three new members earlier this month – Sneha Couvilion of Pacific Northwest National Laboratory, Chris Schadt of … is an Assistant Professor in the Department of Ecology, Evolution and Marine Biology at UCSB, where she leads a research group investigating the physiology and evolution of marine aggregates and biofilms. She credits the …
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Matt Blow
University in 2005, where he studied RNA editing and cancer genetics. Dr. Blow carried out postdoctoral work at LBNL, … function in bacteria. Since 2016, he has been the lead of the User Support Analysis group. The group performs … analysis and develops automated pipelines for analysis of resequencing, transcriptome, epigenome and other …
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RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes
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Clarence Le
… researcher who identifies and analyzes novel clades of RNA viruses and determines novel viral gene functions that may impact hosts and host populations. …
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Forming Scientific Connections and Building Community
The 11th cohort of JGI-UC Merced interns pick highlights from their summer … here.” Mentor: Lorenzo Aureli Project: “ Exploring the epigenetic basis of pathogenicity in bacteria” Erika Maquiling … Sajeet Haridas & Asaf Salamov Project: “ Improving the JGI fungal mitochondrial annotation pipeline ” Anna Kucherova : …
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JGI@25: From Life at the Extremes to Editing Genomes
In honor of the JGI's 25th anniversary in 2022, we have revisited a … technology described by the Nobel Foundation as having “a revolutionary impact on the life sciences.” Building upon … refine and improve the process of finding novel Cas genes and CRISPR systems. The collaboration has resulted in …
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