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Accelerating Metagenomics Discoveries with Deep Learning
… a computational biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … chromosomal sequences in mixed-genome samples) with a new tool called MetaGNN (Prashant Pandey of CRD). The … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence …
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What Happens To a Rainforest When You Dial Up Drought?
… Rainforests store a big fraction of all the carbon on Earth, and soil microbes … take a look at what happens to that storage when a rainforest hits a drought. Tag along with their experiments in a …
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How Microbes Can Protect Plants in Drier Straits
… looking at the efforts of Pankaj Trivedi, whose New Investigator proposal was recently approved through the JGI Community Science Program, to use microbiome science to help make …
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Access to Rock Star Scientists
… Through the JGI-UC Merced Genomics Internship, graduate students Candace … have done the groundbreaking work you’ve been reading about for years! And you can ask them about it! And they’re super …   “This summer internship has broadened my skills and understandings in the field of genomics. This has reinforced …
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Inaugural Critical Minerals & Materials Joint Research Portfolio Announced
… 20 proposals were selected by the Joint Genome Institute (JGI) and the Molecular Foundry (TMF) for their collaborative … of research proposals integrates genomics with nanoscale science, all aimed at accelerating discoveries and … The Joint Genome Institute and Molecular Foundry are DOE Office of Science user facilities. They provide …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid … are metagenomes sequenced? A:  For the next call ( CSP New Investigator ), up to 4 long-reads (PacBio) metagenomes … as input. Data analysis Q:  What types of analysis support does JGI provide for DNA modification detection? A:  DNA …
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Four principles to establish a universal virus taxonomy
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Digging into Microbial Ecosystems Deep Underground
… deep underground, and before the pandemic, they took the JGI on a sampling field trip. One of the questions they’re … work builds off a proposal approved through a collaborative science initiative called Facilities Integrating … due March 16, 2022 to freely access resources at multiple DOE user facilities through the FICUS research support …
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Rex Malmstrom
… and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … molecular protocols.  Finally, his team utilizes new technologies, e.g. acoustic liquid transfer and … Ph.D. in Marine Biology/Biochemistry, University of Delaware BA in …
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Ben Bowen
… Specializing in mass spectrometry-centered projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and integrating mathematics and … impactful scientific discoveries, supporting the DOE’s Biological and Environmental Research user community …
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Tomas Tyml
… Tomas uses traditional cultivation methods along with microscopy and genomics to … within microbial eukaryotes. He hopes to broaden our understanding of the roles these associations play in the …
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Triggering Morel Fruiting
… led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis Martin from the … and Igor Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility,  reported on … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence …
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