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JGI Scientists Pen Genome Watch Articles
… Tanja Woyke and other JGI researchers made their debut writing for the Nature Reviews Microbiology column last year — … with an email in 2018.  Tanja Woyke , who leads the  Microbial Program at the JGI, received a message from Andrea … three Genome Watch articles. “Given the great expertise in microbial genomics and metagenomics of the …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… In April 2020, we mark both the 50th celebration of Earth … JGI-supported project studying the world’s rivers and their microbial communities. He’s focusing on the Arkansas River … in how general environmental stressors, um, alter microbial biomass and then what the consequences are for the …
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Altered Expression of Two Small Secreted Proteins (ssp4 and ssp6) Affects the Degradation of a Natural Lignocellulosic Substrate by Pleurotus ostreatus
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Methane Makers in Yosemite’s Lakes
… and met local wildlife (a marmot!) as they’ve sampled the microbial communities living in the mountaintop lakes of the Sierra Nevada mountains. …
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Learning to Look
… Machine learning approach significantly expands inovirus … a computer could use to conduct a similar type of search in microbial and metagenomic databases. In this case, the … algorithm, the search tool combed through more than 70,000 microbial and metagenome datasets, ultimately identifying …
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JGIota: Looking Back at Methane-Making Microbes
… We count on livestock for food and fiber, but raising these animals also produces an atmosphere-warming gas: methane. Those emissions mainly come from gut … 2010, the JGI has supported researchers studying those microbial methane-makers. Eventually, that could help us …
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The Busy World of Deep Sea Eruptions
… underwater volcanoes and hydrothermal vents — where lively microbial communities thrive, and even support entire … St. John, Gilberto Flores, and Peter Girguis about sampling these communities, and understanding how they’ve adapted to this extreme environment.   …
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Complete Genome Sequence of Rahnella aquatilis CIP 78.65
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Survey of Setaria's natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth … (Danforth Center) drove up and down the highways of the continental United States, occasionally pulling over to the side … a small model grass with a short lifecycle that uses a carbon fixation process known as the C4 pathway, which …
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Len Pennacchio
… In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying state-of-the-art … Genomic Technologies. oClick to learn more about the offerings and capabilities we offer JGI users to help advance … of Genomic Technologies serves as the JGI’s primary point of contact for all High-Throughput Data Generation …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for researchers … Podcasts ,  Spotify or wherever you get your podcasts) Microbial ecologist and JGI user Trina McMahon has been … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the … this may be the first publicly available, river-focused microbial resource that provides information at multiple …
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