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FISH–FACS Enabled Targeted Recovery of Genomes from Uncultivated Environmental Microbial Populations
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining lab protocols at the bench to … and Identification of Mitochondrial Plasmids from DNA Sequence Moitrish Majumdar Mentors: Bikash Shrestha, Crysten …
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How Maize Makes An Antibiotic Cocktail
… Maize produces a family of compounds that protects it against infections — using … would also act on native substrates to produce additional novel antibiotics. Summary The zealexins are chemically … ability make zealexins, and harnessed gene expression data from these lines to identify genes associated with zealexin …
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Making a Lichen Together
… For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … nitrocellulose filters in Petri dishes. The scientists also sequenced the fungus and photobiont’s genomes and compared … This work was supported by an intramural seed grant (IGSP 2008001) to …
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Overview of the Genomes OnLine Database (GOLD)
… TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… On July 8, JGI’s DNA Synthesis Science group held a  JGI Engagement: Accessing … really fully exist back then,” said Hal Alper, a University of Texas at Austin professor, “but we really first heard … the researchers will receive a FedEx package with the sequenced, quality controlled population representing the …
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Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    Understanding how … of where those binding sites are in the genome — those sequences are moving around, disappearing and appearing in … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Crysten Blaby-Haas
… Dr. Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular Materials Initiative, a partnership … She earned her PhD in Microbiology and Cell Science in 2011 from the University of Florida, working with Valérie de … PhD, Microbiology and Cell Science, University of Florida NIH Postdoctoral …
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MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
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Shotgun metagenomic analysis of microbial communities from the Loxahatchee nature preserve in the Florida Everglades
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Bosea psychrotolerans sp. nov., a psychrotrophic alphaproteobacterium isolated from Lake Michigan water
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