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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, … the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with …
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Trent Northen
… the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic methods available to JGI users.  Dr. Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes …
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Effects of Polar Light Cycle on Microbial Food Web
… evolved separately from other similar systems, and offers new clues into a unique environment in the natural world. … Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Boosting Small Molecule Production in Super “Soup”
… Program at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … paper is the first result of the collaboration with the JGI, where they are partnering with Yasuo Yoshikuni and Ian … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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A Step Toward Controlling Soybean Rust
… yields by as much as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio … to counter soybean rust disease. Soybean itself is a  JGI Flagship plant genome , and JGI  published its genome sequence in 2010.       … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Operating Expenses
… FY2025 Spending Profile The JGI is funded primarily by the DOE Office of Biological and …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… For the first time in several years, the DOE Joint Genome Institute hosted several UC Merced students this past summer. This year’s cohort for the JGI-UC Merced Internship Program was brimming with … with Dr. Tomas Tyml and Dr. Frederik Schulz with the New Lineages of Life Group at JGI. And we’ve been working on …
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Functional Insights of Salinity Stress-Related Pathways in Metagenome-Resolved Methanothrix Genomes
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Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans
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Genome Streamlining, Proteorhodopsin, and Organic Nitrogen Metabolism in Freshwater Nitrifiers
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Genomic variation within the maize stiff‐stalk heterotic germplasm pool
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Optimizing de novo genome assembly from PCR-amplified metagenomes
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