Search

… to the Human Genome Project and led annotation and analysis of diverse eukaryotic genomes, from protists to … development reveals conserved genes behind complex multicellularity in fungi. Proc Natl Acad Sci U S A. … 2011; 29: 922-927. Eastwood DC et al. The plant cell wall-decomposing machinery underlies the functional …

A “bait and hook” single-cell genomic approach to bioprospecting. The Science One of … Berkeley National Laboratory (Berkeley Lab). Using a single-cell screen, they can now identify microbes with specific … LBNL Microbes to Biomes Laboratory Directed Research and Development program (LDRD) entitled ‘Tackling …

DOE Quarterly Metrics Q1 – Report on new computational developments for improving microbial, metagenomic, or plant … 8734 2005 28 33.63 8400 8760 * Reflects actual data due to analysis beyond fiscal year-end close. …

Tringe and Tanja Woyke, were all instrumental in the development of the Novel Metagenome Protein Families (NMPF) … within them. Kyrpides and Roux also worked together on the development of a new software tool called geNomad that … Nature Plants study identifying colonization patterns in eelgrass . Igor Grigoriev’s recent work includes the discovery …

… entities that seek to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are … plasmids. They can be found in virtually all of Earth’s ecosystems. A software tool  recently described in  Nature … The Impact In order to gain more insights into Earth’s ecosystems, researchers must examine the interactions that …

… with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages are small viruses … including over 28,000 unique MCP sequences.  Further analysis led to the identification of 328 “high quality” … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …

DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National …

Jess Jarett, a postdoctoral fellow in Tanja Woyke’s Single Cells Group who mentored 2018 intern Akshay Paropkari, … the difficult early stages, so I can begin biological analysis of the data sooner than I anticipated.” In her … graduate intern): In her final year in the Quantitative & Systems Biology PhD program at UC Merced under the …