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Genomes from uncultivated bacteria offers clues to ancestral … lineages Margulisbacteria and Saganbacteria that diverged from the bacterial tree before Cyanobacteria and its … Saganbacteria. At the same time, working with researchers from the Bigelow Laboratory for Ocean Sciences, Microbial …

… biology tools that can help produce value-added products from these systems. He’s worked with the JGI on various CSP … as a UEC member is increasing user program participation from researchers at non-R1 institutions, now defined as …

On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) … data.  Metagenomic data, or DNA sequencing data gathered from whole samples rather than single cells or isolated … utilizing deep learning to automatically generate insights from metagenomic data. In deep learning, a branch of machine …

… working in 21 fields appear on the list, and those from the JGI are: Kerrie Barry I-Min Chen Igor Grigoriev … 52,515 publicly-available microbial draft genomes generated from environmental samples around the world. Much of the data had been generated from samples provided by more than 200 scientists and …

… in developing new methods to improve genome recovery from single cells and to build sequencing libraries from minimal DNA input without amplification. …

In each garden, switchgrass plants clonally propagated from cuttings represent a diverse collection sourced from half of the United States. As  reported January 27, … common gardens began nearly a decade ago with a proposal from UT-Austin’s Tom Juenger, a longtime JGI collaborator …

Over the years more than 3,400 genomes have been sequenced from curated DSMZ isolates, for which quality DNA has been … more than 600 genomes (dubbed “GEBA-Actino”) were sequenced from DSMZ type-strain deposits. All of these genome … and 1,100 metagenome-assembled genomes (MAGs) reconstructed from sequenced environmental samples in a previous study. …

… maturation. Recently reported in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome … has extended the possible virophage genome size range from 13.8-29.3 kilobases (Kb) to 10.9-42.3 Kb. Additionally, the gene counts have similarly gone up from 13-25 to 12-39. “Overall,” the team concluded, “we …

When they tested the screen method on a microbial community from geothermal hot springs, they uncovered a novel … performance, and then applied it to environmental samples from the Great Boiling Spring Geothermal Field in Nevada. To validate the predicted cellulases from their captured genomes, the team then used DNA …

JGI Data Portal , a pilot download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal … are more broadly applicable to the download processes from the other JGI Portals, as well. “For thousands of … experience and beginning work on the download experience from MycoCosm and PhycoCosm, with the intent of eventually …

… specific metabolic processes. A third approach steps away from reconstructing genomes directly from the environment and focuses on sequence reads to link … has advanced drastically, aided by genome assembly from metagenomes. This is a critical step toward better …

… on microalgal communities across different ocean latitudes from pole to pole, using metatranscriptome and metagenome data from the JGI. With multiple threads of evidence showing that … The JGI Algal Program makes genomes and multi-omics data from JGI CSP projects publicly available at the PhycoCosm …