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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … relevant to living on a changing planet. Transcript for Audio Two special days occur in April: the 50th … And that led me to get even more interested in how general environmental stressors, um, alter microbial biomass …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… to advance foundational science, creating opportunities for the global research community. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has released … along multiple avenues, including agriculture, climate modeling, novel bioproducts, and environmental …
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A Plantiful Future: Xiaohan Yang
… Laboratory, believes they can. And, what’s more, that using gene editing technology to conscientiously mix traits of different plant species will help us get there. …
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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, … Universität zu Berlin   has developed an atlas that maps gene expression patterns in the  Arabidopsis root, profiling … nearly 100,000 single root cells and combining the information with previously published datasets. The work was  …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining lab protocols at the bench to … Hour mentioned that she had gained knowledge in bioinformatics and machine learning. “Also,” she added, ”I’ve … Wang Project:  Embeddings Based Clustering of Biosynthetic Gene Cluster for Novel Natural Product Discovery Kayla Kelly …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… Across four forests, researchers have leveraged data from the 1000 … project to form new connections between fungal guilds, genes and function. If a tree falls in the forest — whether … registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species …
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Streamlining Regulon Identification in Bacteria
… up associating transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory … regulation is critical to ensuring genes vital for growth and survival across various environments are …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of … shed light on the global biogeography in the haloarchaeal gene pool, a team led by University of New South Wales … cycles, and possibly cold-temperature enzymes for biotechnological use. Summary Conditions such as extreme …
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Fungus Fuels Tree Growth
… start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science … always found among and within poplar trees, and in an effort to understand its influence on the plant, a team of … studied what happens to the tree’s physical traits and gene expression when the fungus is present. The Impact Black …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of fungi by James et al. and Sekimoto et al . … address some of the most pressing challenges of our time. For more information, please visit  …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … which could then be converted into sustainable biofuels . For its importance to the DOE mission, switchgrass is among … 2007, the JGI has been working on identifying switchgrass genes related to biomass production, drought tolerance, and …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Spencer Chair in Genomics at the HudsonAlpha Institute for Biotechnology! Loretta Spencer served as a manyterm mayor of Huntsville, Alabama and is known for her contributions to … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 …
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