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MVP: a modular viromics pipeline to identify, filter, cluster, annotate, and bin viruses from metagenomes.
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Diversity and function of methyl-coenzyme M reductase-encoding archaea in Yellowstone hot springs revealed by metagenomics and mesocosm experiments
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Metagenomic Methods for Addressing NASA's Planetary Protection Policy Requirements on Future Missions: A Workshop Report
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Phylogenetic proximity is a key driver of temporal succession of marine giant viruses in a five-year metagenomic time-series
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JGI@25: Building a Better Bean
… bean (Phaseolus vulgaris) is actually a vital source of protein in many food-insecure countries around the globe, as … of the JGI; and Scott Jackson of the University of Georgia sequenced and analyzed the genome of the common bean. That … nutritional value, providing anywhere from 10-30% of daily protein requirements. It is also an essential source of iron …
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Transcriptomic data sets for Novosphingobium aromaticivorans DSM12444 and a ΔSARO_RS14285 mutant grown in the presence of glucose and either protocatechuic, vanillic, syringic, or 4-coumaric acid
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JGI-USCCN Strain Sequencing Opportunity
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… genome assembly, researchers offer a gapless end-to-end sequence of complete chromosomes. Auxenochlorella solves a … already used this alga to understand how genes with unusual structures work in green algae. The genome is remarkably … RNA genes with unusual structures that could be useful for protein production and other biotech applications. Engineers …
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Improving the Cacao Genome and Phytozome
… by a Mars, Inc.-led consortium through the Cacao Genome Database project. The genome sequence was assembled by the plant team at the  HudsonAlpha … to a high quality modern standard and includes RNA-seq data. The improved  T. cacao Matina 1-6 genome is now … Theobroma cacao on Phytozome Data Portal …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this … a look at the supercomputing that stitches together large datasets with the assembler program MetaHipMer2. Oak Ridge … — Summit and Frontier — that process terabytes of data with MetaHipMer2. And the National Energy Research …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… So a few years ago, when they set out to analyze 500 metagenomes, it was the biggest project the JGI had ever put … Mendota. In this episode: the software evolution that made metagenome assemblies like this possible. …
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A Step Toward Controlling Soybean Rust
… JGI Flagship plant genome , and JGI  published its genome sequence in 2010.       … Phakopsora pachyrhizi on MycoCosm Data Portal …
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