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1001 Proteomes: a functional proteomics portal for the analysis of Arabidopsis thaliana accessions
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Natural soil microbiome variation affects spring foliar phenology with consequences for plant productivity and climate‐driven range shifts
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From Competition to Cooperation
Tracking evolution of symbiotic lifestyles across multiple … genomes, researchers were able to carry out a broader analysis than had ever been done before to look at how … (CSP # 305), Metatranscriptomics of Forest Soil Ecosystems project (CSP # 570) and the 1000 Fungal Genome …
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where … spectrometry workflows for polar and nonpolar metabolite analysis, creation of large metabolite databases by running … Sci Rep. 2013;3: 1656. … Education … Selected Publications …
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Phytozome: Tutorial Workshop from 2022 CROPS Conference @HudsonAlpha
… workshop held during the June 2022 CROPS Conference at the HudsonAlpha Institute for Biotechnology. Phytozome is the Plant Comparative Genomics portal of the Department of Energy …
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  … Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to reconstruct … strains generated by Grant P01 GM-068087 “Functional Analysis of a Model Filamentous Fungus” and that are …
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JGI@25: The Little Alga That Could
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference … the impact of this tiny, single-celled organism as a model system. “People name genes based on similarity to the Chlamy …
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Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils
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ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies
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BIGMAC : breaking inaccurate genomes and merging assembled contigs for long read metagenomic assembly
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MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
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Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics
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