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Benjamin Cole
… Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the Joint Genome Institute, his focus was … Dr. Cole is focusing on how individual plant cells respond to their biotic environment using emerging single-cell … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic …
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Genomic properties of Marine Group A bacteria indicate a role in the marine sulfur cycle
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The Power of One, Amplified
… A preview of how large-scale single cell genomics complements … more moderate ecosystems. A few years ago, a candidate bacterial lineage was identified from microbial and … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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A Genomic Perspective Across Earth’s Microbiomes Reveals That Genome Size in Archaea and Bacteria Is Linked to Ecosystem Type and Trophic Strategy
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… JGI will advance the bioeconomy, leveraging partnerships to advance foundational science, creating opportunities for the global research community. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has released its newest 5-Year Strategic Plan: Innovating Genomics to Serve the Changing Planet (download a copy at …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Proposals aim to sequence and annotate genomes from Antarctica to Africa … to global oceans. Through the Community Science Program of the U.S. Department of Energy (DOE) Joint Genome … transformations.” The JGI’s large-scale call included algal genomics as a focus area, and one of the accepted proposals …
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Triggering Morel Fruiting
… A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis … JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information for every family of fungi. In the … to an increasingly detailed portrait of molecular features triggering morel fruiting. They include: A diverse …
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Accelerating Metagenomics Discoveries with Deep Learning
… in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data … insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … networks found in nature, allows machines to “learn” features. State of the art algorithms can perform …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… More than 20 UC Merced students have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, … around the world. That said, we recognize that workforce in genomics, including JGI, is not representative of the …
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Single cell genomic and transcriptomic evidence for the use of alternative nitrogen substrates by anammox bacteria
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Genomic evidence for the degradation of terrestrial organic matter by pelagic Arctic Ocean Chloroflexi bacteria
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