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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… A new view into a symbiosis could offer benefits to address climate change: pulling atmospheric carbon into soil and boosting biofuel feedstocks with less fertilizer. For millions of … this work leverages.   These experiments focused on two species at once: the model legume species  Medicago …
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Hiroshi Otani
… technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he … BS, Engineering, Tokyo Institute of Technology Master's, Biotechnology, University of Tokyo PhD, Biotechnology, University of Tokyo … 2023 Feb 17;50(1):kuad005. Otani H, Udwary DW, Mouncey NJ. Comparative and pangenomic analysis of the genus …
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User Support Analysis Group
… focus areas being genome variation, transcriptomics and epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product types, to the development of automated analysis pipelines for standard sequencing …
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JGI Accepts 17 Proposals for Community Science Program
… Interactions Within Ecosystems Latest portfolio of approved proposals highlight biodiversity and how … intent submitted. Many of the proposals focus on harnessing genomics to developing sustainable resources for biofuels … within the eucalypts, a group of fast-growing tree species that are widely grown as feedstocks for …
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Fishing for Novel Cellulose Degraders
… genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is a boxful … this microbe. The work is an example of how function-driven genomics, which Woyke and her colleagues define as “any form … plant carbon decomposition using “function-driven” genomics’. …
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Frederik Schulz
… Genome Institute in 2016 and is leading the New Lineages of Life Group. His research is focussed on the discovery of … sequence data. Dr. Schulz employs multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to find …
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The fungus that made itself at home
… plant mass for conversion to sustainable, alternative biofuels and bioproducts. This study lends insights on how the … from North America – against a third fungal Serpula species, S. himantioides from Europe, that was sequenced and … than its partner brown rots. The team’s results reflect the evolutionary gains and losses of S. lacrymans var. lacrymans …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… UC Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first sampled the area in … californicus (and cone snails in general) outside of mostly anecdotal information,” Ul-Hasan noted. “I spent a …
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Triggering Morel Fruiting
… A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis … in France and Igor Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … importuna Kuo, O’Donnell & Volk) to successfully fruit in common farmland soils. Compared to the contingent fruiting …
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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
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Exploring Polymorphisms Created by Transposable Elements
… elements (TEs) contributed to in the grass model species Brachypodium hybridum . …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent greenhouse gas, regulate Earth’s climate. Most methane is produced in environments without oxygen … Euryarchaeota .  Finding Methane-Making Microbes with Metagenomics  By leveraging metagenomics to sample the entirety …
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