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An Integrated Dataset to Understand Ecosystem Interaction
… processes for the first time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as well … data set will help identify how different elements of the ecosystem interact and respond to changes in the … ecosystems and contribute to stabilizing streambanks, wildlife habitats and water-quality regulation. Focusing on the …
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Year in Review: JGI’s 2018 Progress Report Available Now
The latest edition of the JGI Progress Report highlights notable research and scientific collaborations in 2018. The cover is an image of Mono Lake, a saline soda lake east of California’s …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
The Science Within the archaeal domain, there is a group of tiny hitchhikers. These organisms are abundant and yet … mini genomes to match. As a result, they cannot process all of the chemicals they need to survive. To fill in their … Frontiers Group, the National Science Foundation (MCB-1244557 to J.A.D.) and the Lawrence Berkeley National …
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Axel Visel
Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the development and implementation of strategic initiatives at the JGI. Dr. Visel received his … Computational Biology , Nucleic Acids Research . Over 80 publications in peer-reviewed journals including Nature, …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… crop and ornamental seeds sold for the upper Midwest are often very different than those bred for Texas. Identifying … plant’s traits and genetic diversity,” said John Lovell, an evolutionary biologist at HudsonAlpha and first author of … Gardens Are A Community Effort The common gardens began nearly a decade ago with a proposal from UT-Austin’s Tom …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
In April 2020, we mark both the 50th celebration of Earth Day on … 2 billion people on the planet, to you know, within my lifetime, we should hit around nine or 10, which is thought …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but most species do not grow easily in the … like plasmids, the picture is far from complete.  In 2021 , scientists at St. Jude Children’s Research Hospital …
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JGI-UC Merced Interns Share Their 2021 Experiences
During the summer of 2021, 13 interns from UC Merced spent eight weeks working … Phages … Polymorphisms Created by Transposable Elements … Evolution of the Mitochondria Internship … Cross Species …
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JGIota: The Algae Nicknamed ‘Chlamy’
… in the Environmental Genomics & Systems Biology Division of the Berkeley Lab Biosciences Area.] …
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Adopt-A-Genome
… and Mark Soghomonian share what it was like to take on one of these genomes.  …
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JGIota: Looking Back at Methane-Making Microbes
… bacteria and archaea breaking down plant matter. So since 2010, the JGI has supported researchers studying those …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
This series is the story of a giant metagenome assembly from Wisconsin’s Lake … large datasets with the assembler program MetaHipMer2. Oak Ridge National Lab is home to two supercomputers — Summit and Frontier — that process terabytes of data with MetaHipMer2. And the National Energy Research …
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