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Silver age of GOLD introduces new features
… OnLine Database celebrates 25 years as a vital resource for data contextualization The Science Since its launch 25 … genomic data usage is having the appropriate contextual information, or metadata, stored with them. GOLD provides … project organization system implemented in GOLD consist of: Studies, Biosample/Organisms, Sequencing Projects and …
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Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding
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Mindfully Moving JGI
… of the Berkeley Lab campus. By Friday, October 18, the production sequencing labs in Building 100 were silent. … Walnut Creek, after countless generations of sequencing platforms (up to 120 sequencing machines at maximum) maintained … equipment – all of that is being diverted to be reused or recycled. And so that is in part recycling and sustainability. …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… back story — they rely on enzymes that have been evolving for billions of years. However, these enzymes are often … play a crucial role in how an organism processes both carbon and nitrogen. This research team combined … These enzymes are crucial for creating nucleic acids and proteins, as well as recycling nitrogen. Now, with insight …
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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked … newest 5-Year Strategic Plan: Beyond Basepairs — A Vision for Integrative and Collaborative Genome Science , the … and incubation process. “JGI’s ‘vision’ is truly a tour de force,” said Mary Maxon, Biosciences Associate Laboratory …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… was being waged. In the JGI@25 video below, Susan Lucas, former JGI Production Department Head and current ESnet Deputy Director … the people and resources from these three national labs to form the DOE Joint Genome Institute in 1997. Over the next …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… living on a changing planet. Mo Kaze is a University of California (UC), Merced graduate student working with  Susannah … project, “Microbial Community Structure and Methane Production in California’s Canal System,” focuses on anthropogenic impacts on … address some of the most pressing challenges of our time. For more information, please visit  …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… energy and environmental challenges.   Scanning the California oak woodlands from the air, large swaths of the … can be seen. These plagued patches have become kindling for the inevitable next firestorm. The majestic sentinel … “citizen science” project to generate real-time data for modeling and predicting the spread of a plant disease, …
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Busting the Unbreakable Lignin
… to tackle when it comes to breaking down a plant for energy: Cellulose, hemicellulose and lignin, … remove lignin and transform the remaining components into  biofuels and bioproducts. If anaerobic fungi could be used … use of it, it would change the entire landscape of biomass production and bioproduct engineering. Summary That …
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Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines
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Pyrophosphate-free glycolysis in Clostridium thermocellum increases both thermodynamic driving force and ethanol titers
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… the Energy Sciences Network (ESnet) have been recognized for outstanding achievements in science, technology, and … Science user facilities. The HPCwire Editors Choice Award for Best Use of HPC in Life Sciences went to the Berkeley … users, which include projects looking at wildfire impacts, carbon cycling, and the microbial dynamics in freshwater …
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