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Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network
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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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Metabolic analysis of the soil microbe Dechloromonas aromatica str. RCB: indications of a surprisingly complex life-style and cryptic anaerobic pathways for aromatic degradation
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Yasuo Yoshikuni
… Dr. Yasuo Yoshikuni has been head of the DNA Synthesis Science Program since 2015. The mission of this program is … has supported over 250 projects since it started. At the JGI, Dr. Yoshikuni also manages the Synthetic Biology … joining the JGI, Dr. Yoshikuni was co-founder and chief science officer at a clean technology startup, Bio …
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Extracting the Secrets of Secondary Metabolites
… helps further demystify biosynthetic gene clusters.  The Science Microbial secondary metabolites, those molecules not … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Jasmyn Pangilinan
… Jasmyn provides bioinformatics tools and analysis support for user science, with a focus on metagenomes. Passionate about … reliability, thereby accelerating critical insights for the JGI User community. …
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First Monoploid Reference Sequence of Sugarcane
… a reference for the highly complex sugarcane genome . The Science Most species are diploids and have two sets of … polyploid sugarcane genome now underway as part of the JGI Community Science Program (CSP), a critical factor in developing … BioEnergy Institute, support was provided by the Office of Science of the U.S. Department of Energy under Contract No. …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… determination as they came onsite. From data carpentry to science communications, their schedules were filled with … skills, wet lab skills and overall connections. Theo Loureaux : I wanted to first discover new methods with tools … limited experience with, and to do so with some of the top scientists in that subfield.     Byline: Graham Rutherford …
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Busting the Unbreakable Lignin
… fungi can degrade the hardiest of plant components   The Science There are three main ingredients to tackle when it … yield fuels, and removing lignin in order to do so is a resource-intensive process. Now, a new study shows how … Research Center. O’Malley is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential …
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Genetic Analysis of Physcomitrella patens Identifies ABSCISIC ACID NON-RESPONSIVE, a Regulator of ABA Responses Unique to Basal Land Plants and Required for Desiccation Tolerance
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In silico analysis of the expression profile of AA9 Lytic Polysaccharide Monooxygenases (LPMOs) and the CDH Cellobiose Dehydrogenase enzyme in wood-degrader Agaricomycetes. The Pleurotus ostreatus case
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Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
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