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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid … and transcriptome analysis of microbial, fungal, and plant research projects.  More recently, these long-reads … PacBio reads (i.e., reads with very low error rate), so our pipeline performs long-reads-only assemblies and not …
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Creating an Energy Market for Miscanthus
… What grass is a prized ornamental and a bioenergy plant? Meet Miscanthus , an attractive addition to your garden and a potential fuel for the future. But, to be … will need some upgrades. In this episode, hear from scientists working on understanding Miscanthus biology and …
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iPHoP: A Matchmaker for Phages and their Hosts
… computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do … microbial communities. One day, these phages could boost plant-microbe interactions, nutrient cycling, or carbon … described in Plos Biology , the research team led by scientists at the U.S. Department of Energy Joint Genome …
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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National Laboratory … recognition: for example, a camera’s ability to recognize your face and distinguish it from your friend’s. Biologists … the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of …
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Fungal and plant gene expression in the Tulasnella calospora–Serapias vomeracea symbiosis provides clues about nitrogen pathways in orchid mycorrhizas
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Transcriptional response of the white-rot fungus Dichomitus squalens to polysaccharides reveals a co-expression network of plant biomass conversion related genes
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The Exometabolome of Xylella fastidiosa in Contact with Paraburkholderia phytofirmans Supernatant Reveals Changes in Nicotinamide, Amino Acids, Biotin, and Plant Hormones
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Multilevel analysis between Physcomitrium patens and Mortierellaceae endophytes explores potential long‐standing interaction among land plants and fungi
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Plant genotype and rhizobia strain combinations strongly influence the transcriptome under heavy metal stress conditions in Medicago truncatula
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Eucalyptus grandis MYB‐Like and RAN‐Like Zinc Finger Proteins Display Dual Roles in Regulating Plant Immunity and Symbiosis Pathways
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Identifying the Microbial Cleanup Crew at a Superfund Site
… community involved in a bioremediation effort. The Science In 1999, the Environmental Protection Agency … populations rely heavily on groundwater as their only source of clean drinking water. Over 90% of the PCE in the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Comparative Analysis of 126 Cyanobacterial Genomes Reveals Evidence of Functional Diversity Among Homologs of the Redox-Regulated CP12 Protein    
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