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Quantitative genetic-by-soil microbiome interactions in a perennial grass affect functional traits
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metagRoot: a comprehensive database of protein families associated with plant root microbiomes
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STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies
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Ray Turner Completes Last Tour of Lab Duty at JGI
… 15 years, Ray Turner has been one constant for the Joint Genome Institute. On July 1, 2020, that all changed. Ray’s … a close as this previously retired Naval Commander retires from Berkeley Lab. For the last 15 years, Ray Turner has … Ray oversaw the acquisition and renovation of Building 310, adding the crowning piece of the entire 80,000 square …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia polymorpha. Commonly … M. polymorpha is also among one of the plants representing 35 major evolutionary plant lineages in the  Open Green Genomes Initiative , a project supported by the U.S. …
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DOE Metrics
… % Goal   FY 2026 Total   700.0     8,760     Q1 2026 175 313.081 179% 2,208 2,064 95.4% Q2 2026 175 243.806 139% … developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress … Hours reflect a delay in implementation of the LIMS from Q2 to Q3. As a result of the delay in the LIMS …
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Tracking the Origins of Methane-Producing Microbes
… Biohub, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, report the discovery of a novel archaeum from a hot spring that has the genetic machinery to perform … to these samples by sorting the microbes into small pools of cells that were then sequenced separately. …
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Complete Genome Sequence of Clostridium clariflavum DSM 19732
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Complete genome sequence of Allochromatium vinosum DSM 180T
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Draft genome sequence of Nitrobacter vulgaris DSM 10236T
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Draft genome sequence of Gleimia europaea DSM 26657
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha … – the complete set of RNA molecules transcribed from all the genes within a cell or tissue at a specific … plants did you all look at? Avinash: We started off with 12 plants, which are JGI Flagship Plants, mostly related to …
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