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Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies
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JGI@25: Roots of a Mutualist Relationship
…       Francis Martin on the main impact of ectomycorrhizal fungi, excerpted from his talk at the 2015 JGI Annual …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… kingdoms, including animals, plants, bacteria, archaea and fungi. We thought this kind of analysis would provide a … This analysis led them to identify 2,938 putative AT  genes. Within the AT genes identified across different species, each organism has …
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Triggering Morel Fruiting
… decomposition by the black morel, as well as the gene-expression programs encoding the biochemical processes … unveiled by transcriptomics and proteomics. Our key findings contribute to an increasingly detailed portrait of … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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Genomic analysis of 94 SEMIA strains isolated from common bean nodules: species diversity and genes related to nodulation, nitrogen fixation, and tryptophan metabolism
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… microbiomes that influence algal diversity and gene expression. Sailing from pole to pole on four research … about these algal communities; they could have beneficial findings, like antibiotics, pharmaceuticals, and novel … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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JGI User Executive Committee Expands
… Science Program. As a UEC member, he’s interested in finding ways to boost visibility of the CSP to encourage … approved CSP New Investigator proposal to understand the genetic basis of fungal community assembly on dead wood … Los Alamos National Laboratory. With a background in fungal genetics and evolution, he helps manage the Bacterial-Fungal …
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Genome‐wide association studies and expression‐based quantitative trait loci analyses reveal roles of HCT2 in caffeoylquinic acid biosynthesis and its regulation by defense‐responsive transcription factors in Populus
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The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar‐contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer
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In silico analysis of the expression profile of AA9 Lytic Polysaccharide Monooxygenases (LPMOs) and the CDH Cellobiose Dehydrogenase enzyme in wood-degrader Agaricomycetes. The Pleurotus ostreatus case
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. …
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First Monoploid Reference Sequence of Sugarcane
… in these crops. For diploid species, sequencing programs generally focus on a genotype with two identical sets of … sequence using a targeted approach that focused on the gene rich part of the genome by harnessing information from … such as an entire sugarcane gene and its associated regulatory elements. Sequenced segments of …
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