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Two decades of bacterial ecology and evolution in a freshwater lake
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… the evolutionary past may hold key insights. The way that plants process nutrients has a rich back story — they rely … work was our focus on all the kingdoms, including animals, plants, bacteria, archaea and fungi. We thought this kind of … from each of six kingdoms: eubacteria, archaea, protist, plant, fungi and animal. This analysis led them to identify …
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Philympics 2021: Prophage Predictions Perplex Programs
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
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Promoting the Power of Viral Metagenomics
… Microbiome Data Science Group led by Kyrpides. Since early 2020, people all over the world have been forced to confront …
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JGI Early Career Researchers Featured in mSystems Special Issue
… outline more targeted approaches to reconstruct individual microbes in an environmental sample beyond the … into several small pools before sequencing to recover rare microbes. The technique was applied to a recent Nature … can develop high-throughput and high-resolution studies of interactions between host cells and viruses in the …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… Oh, the magical world of the cow stomach. Rumen – and its microbes – are really a powerhouse. Rumen microbes have the ability to break down hardy plant cell walls and therefore hold clues to how humans … one of the challenges of developing alternative fuels from plants is the high cost and resource requirements of …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… mosses.  New research identifies sex chromosomes in the plant and illuminates the significant role sex plays in how … and have very little oxygen, which is tough on the type of microbes that break down plant matter. This means plants don’t fully decompose in …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… And since microbial genomes are simpler to model than large plant or animal genomes, they are a good starting point to … efforts to build predictive models for the behaviors and interactions of complex systems.  One of its key innovations …
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Meeting report: International soil virus conference 2024
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Root cap cell corpse clearance limits microbial colonization in Arabidopsis thaliana
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Help from Citrus’ Bitter, Hardier Cousin
… orange ripens only bitter, intensely sour fruit. Yet this plant, native to China and now disseminated around the … are senior authors of the  recent study published in  The Plant Journal.  this study included the discovery of … to citrus greening disease. Trifoliate orange may be a plant of bitter fruit, yet sweet are its genetic secrets. …
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