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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of nutrient cycles and … nutrients in these systems.” -Mike Wilkins, Colorado State University GI users and microbiome researchers Mike Wilkins … and his graduate student Kaela Amundson at Colorado State University have many questions about the microbial …
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VEGA Symposium
Hosted by the JGI and co-organized with NIST,  the goal of the Viral EcoGenomics & Applications (VEGA) symposium was … Confirmed Speakers Ishi Keenum , Michigan Technological University Martial Marbouty , Institut Pasteur Ken Stedman, Portland State University Luke Hillary, UC Davis Samuel Díaz-Muñoz, UC …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… scientists are now getting more complete genomic results from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the … in microbiome studies, these scientists (now at Stanford University) collaborated with the JGI. Working together, …
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Polar Phytoplankton Need Zinc to Cope with the Cold
Antarctic algae need their vitamins; zinc fuels some of their most important functions. Even in the chilly waters … Thomas Mock, a marine microbiologist at the University of East Anglia, leads this effort to understand … on microalgal communities across different ocean latitudes from pole to pole, using metatranscriptome and metagenome …
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Tracking the Origins of Methane-Producing Microbes
… archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … the National Academy of Sciences , researchers at Stanford University, the Chan Zuckerberg Biohub, and the U.S. … user facility, report the discovery of a novel archaeum from a hot spring that has the genetic machinery to perform …
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At the Forefront of Terrestrial Virus Research
… is finishing his PhD in Microbiology at The Ohio State University, co-advised by Drs. Virginia Rich and Matthew …
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Accelerating Metagenomics Discoveries with Deep Learning
On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) … insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … (Andrew Tritt of CRD and, independently, Ying Zhang of the University of Rhode Island), and to bin metagenomic contigs …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI … by weeks of tricky, laborious lab work to analyze samples from one experiment. Starting a  few years ago, researchers … Pacific Northwest National Laboratory, Northern Arizona University, Argonne National Laboratory and the JGI.  With …
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Introducing New Members of the JGI User Executive Committee
JGI User Executive Committee (UEC) : Roland Hatzenpichler of Montana State University, Teresa Pawlowska of Cornell University, and Jana U’Ren (pronounced “you-wren”) of the …
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Adam Reisselman on being a 2016 DOE Computational Science Graduate Fellow
The Department of Energy's Computational Science Graduate Fellowship (DOE … meet the Nation's growing need for science and technology professionals with advanced computer skills. During the summer … of 2016,  DOE CGSF recipient Adam Riesselman of Harvard University worked with DOE JGI's Sam Deutsch. Learn more …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
Systematics for the triennium 2017-2020! Established by the University of Queensland in 1986, the van Niel Prize recognizes … Ocean Sciences and as Associate Adjunct Professor at the University of California, Merced. Woyke received a 2014 …
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Back to the Future! A Sorghum Story
… specifically to turn their biomass into sustainable biofuel and bioproducts. John Mullet, a biologist at Texas A&M University, tells us how sorghum’s historical — and literal …
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