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Identification of candidate genes in Arabidopsis and Populus cell wall biosynthesis using text-mining, co-expression network analysis and comparative genomics
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Decomposing a San Francisco estuary microbiome using long-read metagenomics reveals species- and strain-level dominance from picoeukaryotes to viruses
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Matthew Kellom
… microbial life and environment, and using metagenomics to study these complex natural systems. Microbial communities living in hard-to-reach places that are considered to be inhospitable to … interest. Matt also supports various CSP and FICUS user projects for the Metagenome Program. …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… Hear more about what they learned from working with their JGI mentors, what challenges they overcame, and what new skill sets … I started this, uh, summer internship was working with big data, but something that I learned from this program was how …
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The ectomycorrhizal fungus Paxillus involutus converts organic matter in plant litter using a trimmed brown‐rot mechanism involving Fenton chemistry
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Cultivating Symbiotic Antarctic Microbes
… employed multiple microbiology and ‘omics techniques to experimentally determine that Nanohaloarchaeota are … and the biosphere), including the global carbon cycle. The JGI is sequencing large numbers of microbes and microbial … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, experimentally demonstrated that …
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Effects of Polar Light Cycle on Microbial Food Web
… with the seasons. The Science Light-harvesting bacteria (phototrophs) in Antarctica’s Ace Lake defy the norm when it … Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Ancient Algae Reveal Secrets of Plant Evolution
… the genes of land plants’ closest algal relative,  Zygnematophyceae , scientists have enhanced our understanding of … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Quantitative trait loci for cell wall composition traits measured using near-infrared spectroscopy in the model C4 perennial grass Panicum hallii
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Examining the Relationship Between the Testate Amoeba Hyalosphenia papilio (Arcellinida, Amoebozoa) and its Associated Intracellular Microalgae Using Molecular and Microscopic Methods
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Using DNA affinity purification sequencing (DAP-seq) to identify in vitro binding sites of potential Novosphingobium aromaticivorans DSM12444 transcription factors
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… internship program between the DOE Joint Genome Institute (JGI) and University of California (UC), Merced. What started with 2 interns in the summer of 2014 has grown to a total of 75 with the inclusion of the 2023 cohort. Each of …
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