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Detection of short-term cropping system-induced changes to soil bacterial communities differs among four molecular characterization methods
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Microbial community analysis of three hydrocarbon reservoir cores provides valuable insights for the assessment of reservoir souring potential
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… metagenomics to identify over 27,000 microbial genes. The data from that study is now used across California State … University campuses for biotechnology education as part of a course-based undergraduate resource experience. Hear … User Executive Committee, on how that study went from the lab to the classroom. …
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Draft Genome Sequence of Mn(II)-Oxidizing Bacterium Oxalobacteraceae sp. Strain AB_14
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Cracking the Secrets of the Diatom’s Shell
Biofuels and bioproducts are a way to kick our addiction to … Mukhopadhyay and Steve Singer are harnessing the versatile bacterium Pseudomonas putida to break down biomass and … research at the Joint BioEnergy Institute (JBEI) , a JGI partner and one of the four US Department of Energy …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this episode: a look at the supercomputing that stitches together large datasets … with the assembler program MetaHipMer2. Oak Ridge National Lab is home to two supercomputers — Summit and Frontier — …
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David Goodstein
With a background in experimental and computational surface physics, Dr. Goodstein held positions at … focused on building tools to facilitate expert curation of human gene models in support of JGI’s contributions to … analysis and data distribution for the JGI's direct collaborators and the wider plant science community. Dr. …
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Four Draft Single-Cell Genome Sequences of Novel, Nearly Identical Kiritimatiellaeota Strains Isolated from the Continental Deep Subsurface
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New Research Sheds Light on Diversity in the Deep Sea
… to get any sunlight, and yet they still support a unique array of microorganisms adapted to living in extreme conditions. … conditions — like temperature, pH levels or the availability of certain nutrients — influence the makeup and …
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SPRUCE-ing Up Science
JGI intern is now applying his internship lessons on presentations to peatlands Travis Lawrence sits in his backyard in Tennessee — the birds are chirping and a soft breeze ripples through the trees in his backyard. … is now a postdoctoral researcher at the Oak Ridge National Laboratory (ORNL), based in Oak Ridge, Tennessee. Recently, …
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Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen-forming genus Peltigera section Polydactylon
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Simon Roux
… the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development of novel computational tools to identify virus sequences, the design of new … approaches to link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and …
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