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… key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data … science and projects through implementation of advanced analysis pipelines and tools as well as development and …

Over the course of the summer, the JGI-UC Merced Genomics Internship paired … and Systems Biology Mentor: Guohong Wu, Plant Comparative Analysis What effect has your summer internship with the JGI … 3rd year undergraduate student Mentor: Zhong Wang, Genome Analysis What effect has your summer internship with the JGI …

… how microbes can colonize plant roots, focusing on genetic components required for effective colonization. In … (scRNA-seq, Spatial Transcriptomics). … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic … of Cell Identity as an R package … Education … Selected Publications … Software …

… using gene editing technology to conscientiously mix traits of different plant species will help us get there. …

… host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated fungi. Their analysis identified fungal gene families that help determine … a mycobiome culture collection consisting of fungal species from natural Arabidopsis populations around Europe. …

… have been elected to the User Executive Committee (UEC) of the U.S. Department of Energy Joint Genome Institute … approved CSP New Investigator proposal to understand the genetic basis of fungal community assembly on dead wood … improving bioinformatics tools that can help with dataset analysis, as well as how they can be shared with and used by …

A tall native plant of the North American prairie, switchgrass ( Panicum virgatum ) has long been a tantalizing potential biofuel feedstock. But switchgrass has a complex genome and, as a species, encompasses dizzying diversity. So, a team of …

… develop a tool to quickly and accurately identify mobile genetic elements like plasmids and viruses. The Science Mobile genetic elements (MGEs) are genetic entities that seek to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. …

A quick snippet on Antonio Camargo and Simon Roux, a few of the JGI researchers behind software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like viruses spread their DNA, they can …

In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … allow farmers to screen livestock, and breed low-methane producing animals. The Hungate1000 collection has also …

In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … his team tracked the thousands of bacterial and archaeal species using a DNA-based array developed at Berkeley Lab. …