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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… JGI interests in algae and secondary metabolites. A total of 27 proposals have been  approved through the annual  … and the proposal focuses on investigating the repeated evolution of three traits relevant to DOE interests: … and then use computational tools to analyze biosynthetic gene clusters and then develop them for a range of …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The … to white rot fungi. Additionally, some of the saprotrophic genes found in the mycorrhizal species, such as nutrient … The project was funded by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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JGI@25: Solving the Mystery of the Missing Oil
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … for cellular properties, communities and ecosystems.” Building off multiple collaborations, Lab researchers …
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Taking Stock of the Known and Unknown Microbial Space
… in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … biodiversity. Using publicly available genome sequence data generated over the past three decades, their study assesses … “While computationally derived MAGs have been a revolutionary tool for microbiology, it's a call to balance,” …
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Mining Metagenomes for Cas Proteins
… Institute.  The Science Researchers report the discovery of miniature Clustered Regularly Interspaced Short … (ssDNA). The discovery was made possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes … The ability to accurately edit genomes (that is, repair gene mutations, and either delete or add genes in a precise …
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Biodesign
…   The Joint Genome Institute's Biodesign Platform capabilities … into functional assessments. This is done by synthesizing genes, pathways, and whole chromosomes for bioenergy, … automations for DNA design, assembly and analysis Overview of biodesign products The JGI Biodesign platform enables …
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Silver age of GOLD introduces new features
… sequencing projects carried out at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … aims to follow  FAIR data principles to ensure digital assets are findable, accessible, interoperable and reusable. … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… National Ecological Observatory Network (NEON) is a network of field research sites designed to collect long-term open … data to better understand how U.S. ecosystems are changing.  Through the  “Facilities Integrating Collaborations … I need? A: Make a request through the NEON assignable assets program. Q: For a NEON Assignable Assets project, does …
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Busting the Unbreakable Lignin
… New evidence shows anaerobic fungi can degrade the hardiest of plant components   The Science There are three main … component for the plant, like the brick-and-mortar of a building or the human skeleton. It’s more complex, and … JGI data portals and pipelines helped identify potential genes responsible for lignin deconstruction. (The JGI also …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… Ancient  Chloroflexota s ditched their flagella and other traits when … don’t have flagella, meaning they were lost in the evolutionary adaptation to marine environments. These … loss of cell walls and a complex pattern of evolution for genes related to eating plant compounds in both the oceanic …
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Benjamin Cole
… Dr. Cole is interested in studying how plants interact with their … their growth program, and on how plants coordinate their gene expression with light and temperature oscillations … how microbes can colonize plant roots, focusing on genetic components required for effective colonization. In …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… Antarctic algae need their vitamins; zinc fuels some of their most important functions. Even … peering into the function and activity of phytoplankton genes and looking at how communities of these microalgae … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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