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The Power of One, Amplified
A preview of how large-scale single cell genomics complements … thousands of previously unknown and uncultivated microbes through metagenomics. Such techniques take advantage of … unique environment, researchers from the University of Calgary and the U.S. Department of Energy (DOE) Joint Genome …
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The JGI Data Portal: Improving User Experience
… from the other JGI Portals, as well. “For thousands of scientists around the world, the JGI Genome Portal is a critical resource — it provides access to all of JGI’s genomic databases and tools,” noted  Kjiersten … JGI has produced more than 13 petabytes of data, accessible through the Genome Portal. “The task of making data more …
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JGI@25: Fueling Investigation into Methane-Making Microbes
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … the world to map out genomes of rumen microbes. In 2018, through a JGI Community Science Program proposal that …
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Fungus Fuels Tree Growth
… start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science The fungus  Mortierella … Institute (JGI), a DOE Office of Science User Facility, through its  Community Science Program in order to get  M. …
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Integrating Experimentation with Data
… to stay informed … The JGI and EMSL are U.S. Department of Energy (DOE) Office of Science national scientific user facilities … analytical characterization, imaging, and visualization, through a collaborative, peer-reviewed proposal …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … with the HudsonAlpha Institute for Biotechnology. Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter scenes that came with crayons in various shades of white. To researchers searching for sequences of RNA … RNA virus sequences. Using this workflow, the team combed through more than 5,000 data sets of RNA sequences …
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Marine Microbe Contains Multitudes
… microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different … stay localized at different depths. But SAR324 can be found throughout the water column, from the warm, well-lit … to the blue-lit twilight zone, to the continuous pressure of the dark abyss, 4000 m (2.5 miles) deep. Scientists have …
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Streamlining Regulon Identification in Bacteria
… with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory protein. Researchers demonstrated … are expressed when their functions are needed. Data yielded through RIViT-seq expand the known transcriptional …
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An Automated Tool for Assessing Virus Data Quality
… virus sequence fragments and data quality. The Science Through advances in sequencing technologies and … (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … to help researchers assess and improve the quality of metagenome-assembled viral genomes . The Impact The …
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JGI at the AGU Fall Meeting
Register for the meeting here. Here are some sessions of interest (all times in PST unless otherwise noted): … December 7   9:15am PT (online) Town Hall on the role of user facilities in accelerating research and tips for … allows scientists access to multiple user facilities through a single research proposal: Maximize Your Research …
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Better Genome Editing for Bioenergy
A team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in … oil production. The Science CRISPR-Cas9 is a powerful, high-throughput gene-editing tool that can help scientists … tool will make the right cut, researchers created a set of guide RNAs that were effective against 94 percent of the …
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