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JGI Welcomes New UEC Members
… the JGI user community and is responsible for providing input and advice on JGI policies and practices that … affect users and their access to technical capabilities JGI offers, as well as proposal review procedures and the … stages. The election period concluded on October 21. The results are in and JGI extends a warm welcome to the three …
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JGI-UC Merced Interns Share Their 2021 Experiences
During the summer of 2021, 13 interns from UC Merced spent … hone science presentation skills, and participate in professional development enrichment activities. For some … Clustering Scalable … Cataloging Lineage Specific Conserved Genes in Giant Viruses … Pan-genome Graphs: Approaches for …
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Trent Northen
… to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the … Genome Engineering Enables Rapid Activation of Biosynthetic Gene Clusters. Nat Microbiol. 4(12):2498-2510. doi: … … Metabolomics Science Program … Education … Selected Publications … Awards and Honors …
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Draft genome and description of Consotaella salsifontis gen. nov. sp. nov., a halophilic, free-living, nitrogen-fixing alphaproteobacterium isolated from an ancient terrestrial saline spring
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Arboriscoccus pini gen. nov., sp. nov., an endophyte from a pine tree of the class Alphaproteobacteria, emended description of Geminicoccus roseus, and proposal of Geminicoccaceae fam. nov.
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… 25th anniversary. Over the last year, we’ve been revisiting a number of notable achievements that showcase our collaborations and … fungi also, unexpectedly, secrete natural products . Those results showed that these fungi may be able to provide tools …
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Supercharging SIP in the Fungal Hyphosphere
High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi … The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial communities, with results published in the  November 2022 issue of Microbiome …
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Marianne Buscaglia
… researcher who uses metagenomics to study giant viruses in cold marine environments and is interested in analyzing genes that can impact the metabolism of their hosts. …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… around the country recognize that crop varieties grow best in certain regions. Most plant species have adapted to their … crop and ornamental seeds sold for the upper Midwest are often very different than those bred for Texas. Identifying … to customize the crop for additional end products. The genetic diversity within this set of plants, each with a …
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Triggering Morel Fruiting
A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis … In the following guest piece, JGI user Dr. Tan details the results of the team’s work. Morels are economically, … decomposition by the black morel, as well as the gene-expression programs encoding the biochemical processes …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … environmental samples — to identify over 27,000 microbial genes. These genes were identified based on their potential …
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