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Extracting the Secrets of Secondary Metabolites
… Repeats) is the leading tool for accurately editing genomes, its effectiveness has historically been limited due … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … exactly how P. luminescens and its secondary metabolites work could yield new tools for pest control. Secondary …
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Marine Synechococcus isolates representing globally abundant genomic lineages demonstrate a unique evolutionary path of genome reduction without a decrease in GC content
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, … the world. Most of those researchers send their samples in from afar, without ever hearing much about the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with …
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Plant Microbial Interactions Group
… fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial … viruses that all contribute to a dynamic ecosystem. We are interested in how plants self-organize, influence, and are … Plant microbiomes hold the amazing ability to influence plant development, fitness and …
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Cultivating Symbiotic Antarctic Microbes
… and the biosphere), including the global carbon cycle. The JGI is sequencing large numbers of microbes and microbial … consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and … microbes have adapted to thrive in polar ecosystems. The work by Cavicchioli’s team sheds light on the range of …
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Virus Discoveries that Keep Getting Bigger
… Sequence-based studies — from metagenomics to single-cell work — have quickly accelerated understanding of giant … Nucleocytoviricota , these giant viruses boast larger genomes than many bacteria. Until recently, understanding of … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Operating Expenses
… FY2025 Spending Profile The JGI is funded primarily by the DOE Office of … Biological and Environmental Research (BER), a program within the DOE Office of Science. …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… enabled by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … methane production to confirm that indeed, they were. The work was enabled in part by working with both the JGI and … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Functional Insights of Salinity Stress-Related Pathways in Metagenome-Resolved Methanothrix Genomes
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Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans
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Genome Streamlining, Proteorhodopsin, and Organic Nitrogen Metabolism in Freshwater Nitrifiers
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Genomic variation within the maize stiff‐stalk heterotic germplasm pool
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