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… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist … research achievements that support open data practices, development of standards and processes for data … and impactful analysis of microbiome data that has changed our understanding of the microbiome and the …

… For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … Asterochloris glomerata . To see how gene expression changes when living together versus apart, the team grew the … of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and his team at the …

… A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental … genome sequences for members of the microbial world through bulk community sequencing (metagenomics) and … of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley …

… JGI is in the process of shifting its operations from Walnut Creek to the heart of … JGI’s operations). At the JGI, that translated to sorting through the stuff accumulated in offices, labs, lockers, and other storage spaces in Walnut … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s …

… with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory … of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley … are expressed when their functions are needed. Data yielded through RIViT-seq expand the known transcriptional …

… JGI With DOE investments in graphical processing unit (GPU)-based high-performance computing resources, an upcoming … Computing Facility (OLCF), NVIDIA, and the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … aren’t getting any smaller and we need to keep pace with changes in industry/DOE Advanced Scientific Computing …

… A two-day kick-off meeting held at Lawrence Berkeley National Laboratory … in their functional aqueous environment.  During the tours through four national user facilities located at Berkeley … Berkeley Lab. Moreover, follow-up meetings, agreements on exchange of materials and samples as well as research visits …

… The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest … complex compounds called natural products . Yet, combing through the genomes of four anaerobic fungal species has … of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley …

… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version … and only, version of Phytozome accessible as an interactive website. Since May 2019, v12 has not had any additional … v13. Why is it necessary to retire Phytozome v12? The codebase for Phytozome v12 was first deployed (as the foundation …

… In a special issue of mSystems , out May 14, 2019, JGI researchers are among … uncultivated, Roux outlines what’s been achieved thus far based on computational predictions, and future directions … be the foundation upon which researchers can develop high-throughput and high-resolution studies of interactions …

… to expression, scientists can now opt for various shades of grey. The ability to fine-tune the level of gene … of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley … Laboratory (Berkeley Lab). Researchers used a library-based approach to fine-tune gene expression. They tested …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … over 27,000 microbial genes. These genes were identified based on their potential to efficiently degrade …