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An Automated Tool for Assessing Virus Data Quality
… fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, more and more … annotation methods, it was possible to distinguish between metabolic genes found in the viral genome versus those from …
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Dan Rokhsar
Dr. Rokhsar joined the DOE Joint Genome Institute in 2000 as the founding … IBM Watson Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, … Genomics and Computational Biology … Education … Selected Publications … Awards and Honors …
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User Advisory Committees
All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s … values, which guide the relationships we nurture in our workplace and seek to establish with our …
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JGI@25: Building a Better Bean
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … to their economies. It also plays an important role in soil health through nitrogen-fixation and holds clues for …
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Learning to Look
Machine learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” … inoviruses are in every major microbial habitat—including soil, water, and humans—around the world. By the numbers, …
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Hiroshi Otani
Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has … Characterization of p-hydroxycinnamate catabolism in a soil Actinobacterium. J. Bacteriol. 196, 4293-4303. Otani, … Mol. Microbiol. 87, 1223-1236. PubMed … Education … Publications …
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Picking Up Threads of Cotton Genomics
Analysis reveals cotton genome stability across global lineages . Come harvest time, the cotton fields look like popcorn is literally growing on plants, with fluffy white bolls bursting out of the … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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Cultivating Symbiotic Antarctic Microbes
… cultures reveal they are symbionts and not free-living organisms. The Science Researchers employed multiple … in environmental processes (related to interactions of soil-sediment environments, water and air-atmosphere with … insights about how microbes have adapted to thrive in polar ecosystems. The work by Cavicchioli’s team sheds light on …
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JGI User Executive Committee Expands
Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility … how these changes affect the dynamics and functioning of ecosystems. She leads a recently approved CSP New …
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In depth metagenomic analysis in contrasting oil wells reveals syntrophic bacterial and archaeal associations for oil biodegradation in petroleum reservoirs
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Enlarging Windows into Understanding Gene Functions
JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of …
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2022 Progress Report
Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems …
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