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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of … cycles, and possibly cold-temperature enzymes for biotechnological use. Summary Conditions such as extreme … understand how they’ve adapted to these conditions, information that could have biotechnological applications. The …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but most … shotgun metagenomic sequencing and single-cell sequencing. For years, extracting single cells and then amplifying their …
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You Can Move, But You Can’t Hide
… to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found in … the National Microbiome Data Collaborative’s EDGE platform. The Impact In order to gain more insights into Earth’s … Exascale Computing Project (17-SC-20-SC), a collaborative effort of the U.S. Department of Energy Office of Science and …
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Open Frameworks Training the Next Generation of Scientists
… Educational training technologies provide opportunities for students and professors alike The Science In  PLoS Pathogens , a team of faculty and researchers describe a workforce development program for higher education that develops … National Science Foundation Research Coordination Network for Undergraduate Biology Education (Award # 2418285) and …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint … also holds a joint appointment with the University of California, Berkeley. Nowadays, Session is an Assistant … arise when different ancestral species crossbreed before genome doubling. In allopolyploids, the set of …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… A genetic architecture that is characteristic of the sex chromosomes of mammals is, for the first time, seen in a plant. The Science Sex in … familiar with: differentiating into male and female sexes. For the first time, the sex chromosomes of shrub willow have …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… A two-day kick-off meeting held at Lawrence Berkeley National Laboratory … from the ACTIVE SITES Research Center (ACSI), the Centre for Water and Environmental Research (ZWU) of the University … biology, omics, and big data science, machine learning for experimental science, energy conversion and water …
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JGI@25: Building a Better Bean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … in soil health through nitrogen-fixation and holds clues for maximizing soybean, the common bean’s close relative, as … by Jeremy Schmutz of the JGI and the HudsonAlpha Institute for Biotechnology; Phil McClean of North Dakota State …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship internship program between the DOE Joint Genome Institute (JGI) and University of California (UC), Merced. What started with 2 interns in the … the Lab. “This project represents part of our long term efforts to contribute towards a diverse workforce and …
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Eelgrass Proves to Be Much Younger Than We Thought
… less than previously believed.  The Science Eelgrass, one of the most abundant plants in the ocean, originated in Japan before spreading around the globe. Now, scientists have shed … Nature Plants , was able to assess absolute time estimates for major colonization events. It was previously assumed, …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… 25-plus years since the JGI’s inception, making it possible for researchers to get a close look at more ecosystems and organisms than ever before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. … address some of the most pressing challenges of our time. For more information, please visit  …
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Enlarging Windows into Understanding Gene Functions
… in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a … array of combinations, are unremarkable, save perhaps for the absence of all the other letters of the alphabet. … an innovative way to rapidly capture the binding location for most transcription factors in a species,” O’Malley said. …
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