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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… at the JGI’s history, from its beginnings in the sequencing for the Human Genome Project out to the future of the … Hardworking Team Todd Anderson , Director of the Biological Systems Science Division at DOE Office of Biological and … in 2006 when the JGI transitioned from human to microbial genetics. Drell held the role until he retired in 2018. …
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The Power of One, Amplified
… approaches including amplicon and metagenomic sequencing. For example, they showed that the composition of the … that species specific sets of single cells harbored mobile genetic elements that were missed within paired metagenome … are often less diverse than those within more moderate ecosystems. A few years ago, a candidate bacterial lineage was …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
Program , along with Jenny Mortimer, Director of Plant Systems Biology at the Joint BioEnergy Institute (JBEI). … involved? How long does it take to do all the analyses? A:  For the JGI  New Investigator and  Functional Genomics … Biol. 2019 Apr 19;14(4):704-714. doi: 10.1021/acschembio.8b01107. Epub 2019 Apr 4. Q:  Any advice on normalizing …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… back story — they rely on enzymes that have been evolving for billions of years. However, these enzymes are often … as a faculty affiliate in the Environmental Genomics and Systems Biology Division of Lawrence Berkeley National … to core nitrogen metabolism, this team built a phylogenetic tree using bioinformatic software called FastTree …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
Programs Deputy Axel Visel teamed with University of California (UC), Merced assistant professor Suzanne Sindi from … explained: “One of the hallmarks of JGI is our diverse workforce and our diverse collaborators around the world. That … graduate intern): In her final year in the Quantitative & Systems Biology PhD program at UC Merced under the …
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The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host
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Igor Grigoriev
… of Plant and Microbial Biology at University of California, Berkeley. He contributed to the Human Genome Project … Russia PhD in Molecular Biology, Research Institute for Genetics and Selection of Industrial Organisms, Moscow, … … Fungal & Algal Science Program … Education … Selected Publications … Awards and Service …
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Fishing for Novel Cellulose Degraders
The Science One of the most vital pieces of equipment for fly fishing is a boxful of lures. Designed with feathers … The team first tested the approach on bacterial laboratory models to set a reference for its performance, and then … User Facility, is supported under Contract No. DE-AC02-05CH11231. The work was supported by a JGI Director’s Science …
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JGI Early Career Researchers Featured in mSystems Special Issue
In a special issue of mSystems , out May 14, 2019, JGI researchers are among the … sorting (FACS) to sort cells into several small pools before sequencing to recover rare microbes. The technique was … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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A Collaboration to Improve Plant Genome Annotations Across Species
… works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in genome improvement … Why is a resource like this important to the field of plant genetics/genomics? Avinash: Having a better handle on the … on a few species like Arabidopsis or rice as homology models for computational function predictions and also due …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… a chemical and biological engineer at the University of California Santa Barbara. So plants don’t break down without a … that biomass could serve as the starting material for a wide range of fuels and chemicals. To get to that … enzymes. They found many enzymes that outperformed industry standards.  A year later, her team used …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection … and Liability Act (CERCLA) was enacted by Congress in 1980 for Superfund sites which are hazardous waste areas that … of Energy operated under Contract No. DE-AC02-05CH1123. Partial support was provided by the National Center …
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