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Yasuo Yoshikuni
Dr. Yasuo Yoshikuni has been head of the DNA Synthesis Science Program since 2015. The mission … Editorial board member of Synthetic Biology (Oxford Journal) Review committee member of International Journal of … … DNA Synthesis Science Program … Education … Selected Publications … Awards and Honors …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… populations rely heavily on groundwater as their only source of clean drinking water. Over 90% of the PCE in the … used to clean up the toxic chemicals is commonly known as Enhanced Reductive Dechlorination (ERD.) It is dependent on … the minimum amount of what’s allowed in drinking water. However, in the deeper sites, toxic chemicals remain.  To …
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JGI-UC Merced Interns Share Their 2021 Experiences
During the summer of 2021, 13 interns from UC Merced spent … hone science presentation skills, and participate in professional development enrichment activities. For some … … Cataloging Lineage Specific Conserved Genes in Giant Viruses … Pan-genome Graphs: Approaches for Complete …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
In   April 2020, we mark both the 50th celebration of Earth … working to address some of the most pressing challenges of our time. For more information, please visit  …
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A Step Toward Controlling Soybean Rust
The United States  is the world’s leading soybean producer , and soybeans are used to produce … causes Asian Soybean Rust (ASR) and is the major pathogen of soybean. Left uncontrolled, soybean rust could reduce … working to address some of the most pressing challenges of our time. For more information, please visit  …
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Zhong Wang
Research in the Analysis R&D group focuses on developing new … and enabling data-driven science. This is a group of computational biologists, bioinformaticians, computer … the Wang group has developed customized data analyses and software to enable “grand-scale” scientific projects. These … metagenome binning software … Education … Selected Publications … Software …
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A Redesign for Yeast’s Genome, Chromosome by Chromosome
To engineer yeast to do more, and understand genomes in general, Jef Boeke, Weimin Zhang (NYU Langone Health) and Leslie Mitchell …
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CSP New Investigator Call
The CSP New Investigator Call is for investigators and research … initiatives new to the JGI. Projects must be independent of ongoing JGI proposals, and lead PIs cannot have been lead … synthetic biology review process .  … Proposers are encouraged to review the JGI’s sample requirements . Samples …
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JGIota: Looking Back at Methane-Making Microbes
We count on livestock for food and fiber, but raising these animals also produces an atmosphere-warming gas: methane. Those emissions mainly come from gut microbes — the bacteria and archaea …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this episode: a look at the … — Summit and Frontier — that process terabytes of data with MetaHipMer2. And the National Energy Research …
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Kjiersten Fagnan
Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing … closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was appointed CIO of the JGI in … … About the JGI Chief Informatics Officer … Selected Publications … Awards and Honors …
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, … efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … techniques, the platform delivers rich metabolite profiles from diverse biological and environmental samples in … Sci Rep. 2013;3: 1656. … Education … Selected Publications …
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