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JGIota: Looking Back at Methane-Making Microbes
… We count on livestock for food and fiber, but raising these animals also … and wool. Hear more from JGI collaborators Sinead Leahy (New Zealand Agricultural Greenhouse Gas Research Centre) and …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what … prediction approaches, researchers have created a new program called iPHoP (pronounced “eye-pop”,  freely … draws on the strengths of multiple virus-host prediction methods. In building this program,  described in Plos …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users requiring multiple omics methods to examine microbial chemical production. The … promoter sequences within these gene clusters, offering new regulatory targets for engineering efforts. Importantly, …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint … works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in genome improvement … groups joined the project to contribute to the data for six new species. I must mention that some of the members from …
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Axel Visel
… Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the … Institute in Hanover, Germany, where he developed novel tools for large-scale in situ gene expression analysis in … applied novel computational and experimental sequence-based methods for elucidating the gene regulatory landscape of …
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Tracking the Origins of Methane-Producing Microbes
… Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane Metabolism. Methane-producing archaea are estimated to produce 500 million tons of methane a year, which is over … These two things combined led us to conclude that our new methanogen did not belong to the Euryarchaeota, the …
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Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution
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Microbial life under ice: Metagenome diversity and in situ activity of Verrucomicrobia in seasonally ice‐covered Lakes
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Optofluidic Raman-activated cell sorting for targeted genome retrieval or cultivation of microbial cells with specific functions
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Sediment microbial communities in Great Boiling Spring are controlled by temperature and distinct from water communities
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Impact of fire on active layer and permafrost microbial communities and metagenomes in an upland Alaskan boreal forest
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Rapid Response of Nitrogen Cycling Gene Transcription to Labile Carbon Amendments in a Soil Microbial Community
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