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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one “petabase” – …
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Improving the Cacao Genome and Phytozome
… Global chocolate brands can’t exist without cocoa According to the  … fungal infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s largest buyers of cocoa, is collaborating … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Integrating Experimentation with Data
…   Registration for this meeting has closed           Registration fees:                   General attendees: $500    … The JGI and EMSL are U.S. Department of Energy (DOE) Office of Science national scientific user … Click to view a downloadable copy of the sponsor prospectus …
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H2-saturation of high affinity H2-oxidizing bacteria alters the ecological niche of soil microorganisms unevenly among taxonomic groups
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Synergistic interactions between anammox and dissimilatory nitrate reducing bacteria sustains reactor performance across variable nitrogen loading ratios
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Complete Genome Sequences for the Anaerobic, Extremely Thermophilic Plant Biomass-Degrading Bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden understanding … family of enzymes is critical to the synthesis and broad diversity of terpenes. Until recently, studies of the TPS … This work was supported by the Australian Research Council (grant … Sequencing and assembly data carried out by EMBRAPA as part of the  Corymbia  genome project was supported by FAPDF …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately … genome discoveries. Unlocking the intricate details of life’s genetic blueprint has long been a significant … foundation models. However, the sheer vastness of microbial diversity is not covered by reference genomes.”  Most of the …
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Sphingomonas palmae sp. nov. and Sphingomonas gellani sp. nov., endophytically associated phyllosphere bacteria isolated from economically important crop plants
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Gut Fungi: Unexpected Source of Novel Chemicals
… Fungi from herbivore poop make surprisingly complex compounds — an energetically … The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest … fungi synthesize molecules that are sources of new chemical diversity; the team identified what looked to be three …
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference genome sequence … wild Miscanthus lineages to better understand the genetic diversity of the grass, which could help in optimizing … This work was supported by the Energy Biosciences Institute and the DOE …
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JGI@25: Building a Better Bean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … Schmutz explained, meaning the plant’s reduced genetic diversity makes it easier to genetically manipulate. One … P. vulgaris on Phytozome … Plant Datasets …
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