Results

Microbial Community Field Surveys Reveal Abundant Pseudomonas Population in Sorghum Rhizosphere Composed of Many Closely Related Phylotypes
Learn more
Position-Specific Metabolic Probing and Metagenomics of Microbial Communities Reveal Conserved Central Carbon Metabolic Network Activities at High Temperatures
Learn more
The United States Culture Collection Network (USCCN): Enhancing Microbial Genomics Research through Living Microbe Culture Collections
Learn more
Ecological Dichotomies Arise in Microbial Communities Due to Mixing of Deep Hydrothermal Waters and Atmospheric Gas in a Circumneutral Hot Spring
Learn more
Integration of Metagenomic and Stable Carbon Isotope Evidence Reveals the Extent and Mechanisms of Carbon Dioxide Fixation in High-Temperature Microbial Communities
Learn more
IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes
Learn more
JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … from environmental samples — to identify over 27,000 microbial genes. These genes were identified based on their …
Learn more
Entities inside one another ‐ a matryoshka doll in biology?
Learn more
JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … and Oregon counties. It has been detected at scores of nurseries across the nation, elevating concerns about the … the California bay laurel. Because the oaks are considered “dead-end” hosts, he suggested that the epidemiology of the …
Learn more
The JGI announces FY25 awardees for our Community Science Program Annual Call
… Call. These projects include cutting-edge research into microbial communities — from freshwater estuaries reshaped … degradation.  “We are  very excited to see the outcome of the innovative research  being proposed by this year’s … CSP investigators,” said Tanja Woyke, Deputy Director of JGI’s User Programs. “Many of these projects are large in …
Learn more
You Can Move, But You Can’t Hide
… to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found in … in soils and water. MGEs like viruses and plasmids drive microbial processes and evolution. This is because MGEs can … The U.S. Department of Energy Joint Genome Institute …
Learn more
Assemblathon 1: A competitive assessment of de novo short read assembly methods
Learn more