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JGI@25: Solving the Mystery of the Missing Oil
In honor of the JGI's 25th anniversary in 2022, we have … also helped track and characterize the shifting waves of microbial communities involved in removing different … with the JGI successfully simulated how successive waves of microbial populations degraded the dispersed oil.   Terry …
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Learning to Look
Machine learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” readers need to look for a number of … a computer could use to conduct a similar type of search in microbial and metagenomic databases. In this case, the …
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JGIota: Looking Back at Methane-Making Microbes
We count on livestock for food and fiber, but raising these animals also produces an atmosphere-warming gas: … 2010, the JGI has supported researchers studying those microbial methane-makers. Eventually, that could help us …
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The Busy World of Deep Sea Eruptions
The ocean depths are vast and dark. But there are hotspots on the ocean floor — underwater volcanoes and hydrothermal vents — where lively microbial communities thrive, and even support entire … St. John, Gilberto Flores, and Peter Girguis about sampling these communities, and understanding how they’ve adapted …
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, … became Platform Lead where she manages metabolomics production for community sequencing projects and heads R&D efforts … Rocha UN, Shi S, et al. Dynamic root exudate chemistry and microbial substrate preferences drive patterns in …
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From Competition to Cooperation
Tracking evolution of symbiotic lifestyles across multiple fungal … able to carry out a broader analysis than had ever been done before to look at how multiple forest fungi have … how mycorrhizal fungi play an integral role in soil carbon storage. Summary There are three types of fungal …
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Evolution of a Fungal Gene Expression Regulator
Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or G in a … methylation of the base cytosine at the 5th position on its carbon ring, or 5mC. In many organisms, 5mC is an important …
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JGI on the 2020 Highly Cited Researchers List
Congratulations to the 2020 Highly Cited Researchers at the … those recognized by Clarivate Analytics as “true pioneers in their fields over the last decade, demonstrated by the … that led to the release of 52,515 publicly-available microbial draft genomes generated from environmental samples …
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Scaling Up Existing Skill Sets
Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI … opportunities in fields ranging from plant-microbe interactions to functional genomics. Hear from five of the Summer … Merced in Spring 2019.) Mentor: Ben Cole, Genomics of Plant-Microbial Interactions What effect has your summer …
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2022 Progress Report
Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to … from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision The vision of the U.S. Department of Energy (DOE) Joint …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
To boost crops more efficiently in the future, the evolutionary past may hold key insights. The way that plants … play a crucial role in how an organism processes both carbon and nitrogen. This research team combined … for creating nucleic acids and proteins, as well as recycling nitrogen. Now, with insight into a specific enzyme …
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Refining the Process of Identifying Algae Biotechnology Candidates
… to summary above^ as well ] The Science The recipe for growing algae as a source of sustainable biofuels seems fairly simple: place these algae in a container with access to sunlight, water and carbon dioxide so they can grow, and then harvest for use as …
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