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iPHoP: A Matchmaker for Phages and their Hosts
… be a specific host the virus has adapted to commandeer. For bacteriophage viruses, these hosts are microbes like bacteria, not humans. With metagenomic … researchers have found more of these viruses than ever before, in all kinds of ecosystems. However, matching these …
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Benjamin Cole
Dr. Cole’s research focus has been on understanding how microbes can colonize plant roots, focusing on genetic components required for effective colonization. In addition, Dr. Cole is … (scRNA-seq, Spatial Transcriptomics). … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic …
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UC Merced Interns Reflect on Their JGI Summer Projects
… language processing techniques to categorize genetic information. Learn more about their work here in a series of … virtual events and technology enabled a fruitful experience for mentors and students alike. Tools like Slack, Google … career in genomics, and to help foster a diverse future workforce in science. Since the program’s inception, more than …
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Party in the Rhizosphere
There’s a party in the soil, and microbes are the VIPs. They’re feasting on the compounds …
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Nigel Mouncey
… experience from almost 20 years in the Industrial Biotechnology private sector, as well as research expertise … genetics that started with his education and carried forward into his roles as a senior research scientist at … and Biotechnology (2021) 2016 World Bio Markets Bio-based Business Person of the Year Publications Committee …
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Experimenting with EcoFABs for Student Labs - Jill Bouchard & Ying Wang
To set up flexible, repeatable experiments on plants and microbes, Trent Northen’s group at Berkeley Lab created a …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
Madison. And Trina McMahon's lab has been sampling the microbes of that lake for over 20 years, to understand how the freshwater …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the … completeness of metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for identifying …
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How Maize Makes An Antibiotic Cocktail
… revealed that just a handful of enzymes are needed to transform zealexins and related precursors into a bonanza of … the protective function of zealexins and related compounds for other plants, including those cultivated for bioenergy. The zealexin synthesis pathway may be …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… plant species have adapted to their local environments; for example, crop and ornamental seeds sold for the upper … of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of … study. The use of switchgrass as a feedstock for biomass-based fuels was initially fostered by DOE’s Bioenergy …
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What Happens To a Rainforest When You Dial Up Drought?
Rainforests store a big fraction of all the carbon on Earth, and soil microbes play a key role in pulling that carbon out of the … take a look at what happens to that storage when a rainforest hits a drought. Tag along with their experiments in a …
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The Power of One, Amplified
… approaches including amplicon and metagenomic sequencing. For example, they showed that the composition of the … between the analyzed community members. The Impact Though microbes help regulate the planet’s nutrient cycles and are … potentially of use in fields ranging from agriculture to biotechnology and medicine, the vast majority in, on, and …
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