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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… The Sequence to Function: Applications and Analysis for the Future (SFA²F) meeting brings together established … discussions, workshops, and informal networking events. JGI will present both a genome center talk and a tech talk. Stop by the JGI booth to learn about our user programs and how we can …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected … of the Microbiome Data Prize by the American Society for Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the development of …
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JGI-USCCN Strain Sequencing Opportunity
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Cultivating Symbiotic Antarctic Microbes
… The Impact The Antarctic lakes are a “treasure trove” of unknown microbes that play critical roles in environmental … and the biosphere), including the global carbon cycle. The JGI is sequencing large numbers of microbes and microbial … of an obligate symbiont—entirely dependent on the other for required nutrients—is genome size. The obligate …
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JGIota: Looking Back at Methane-Making Microbes
… We count on livestock for food and fiber, but raising these animals also produces … and archaea breaking down plant matter. So since 2010, the JGI has supported researchers studying those microbial … producing things like meat, milk, and wool. Hear more from JGI collaborators Sinead Leahy (New Zealand Agricultural …
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SIPs with Standards
… Stable Isotope Probing (SIP) is a powerful technique for studying microbial communities. These experiments can … catch: SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible … multiple teams and analyses. This episode, Rex Malmstrom (JGI), and Roli Wilhelm (Purdue University), share a few …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
… snippet on Antonio Camargo and Simon Roux, a few of the JGI researchers behind software that finds plasmids and …
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Gotta Catch 'Em Gall
… (UC Berkeley and the Joint BioEnergy Institute) are looking for new ways to engineer plants. So they’ve looked into … how this project unfolded, and how they worked with the JGI's metabolomics program to find out more about these …
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The Fungi That Survive In Antarctica
… are working with scientists from around the world – and the JGI – to understand them better. …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… McMahon's lab has been sampling the microbes of that lake for over 20 years, to understand how the freshwater … to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes are the …
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JGIota: A Surprise for Chloroflexota — The First Flagella!
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Georg Rath
… has been leading the Systems Infrastructure Team at the JGI since 2020. Before joining the JGI, he has been working on the boundary of life science and …
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