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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users requiring multiple omics methods to examine … standard conditions. As described in a recent issue of mSystems , scientists found that adding salt to the growth … remain silent under standard laboratory conditions. Researchers with the Department of Energy (DOE) Joint Genome …
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Statement on the Use of Genomics Data
… Genome Project (HGP), and building upon the principles for open access in the field of genomics established in  Bermuda (1996-1997) and reinforced by the  Fort Lauderdale Agreement (2003), the JGI … when these records will be made available again within NCBI systems. In addition, the JGI issued a Request for …
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Charting Progress toward Professional Goals
… next generation of STEM professionals. Students can apply for internships and work onsite with an experienced … gained from their mentors, and apply their newfound knowledge to future career paths.  To learn more about their … You learned a lot about how to work with these various models and trial and error, and what it's really like to do …
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SIPs with Standards
… Stable Isotope Probing (SIP) is a powerful technique for studying microbial communities. These experiments can … SIP analysis to make these experiments accessible to more researchers. Ultimately, the goal is to generate SIP data … -- more reproducible, more reusable, and more insightful, for the future of studying microbial communities.   …
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Green Algae Reveal One mRNA Encodes Many Proteins
… Proceedings of the National Academy of Sciences , a team of researchers has found numerous examples of polycistronic … research team included scientists at the University of California (UC), Berkeley, UCLA, UC Davis, Brookhaven National … enabled by the “Facilities Integrating Collaborations for User Science” (FICUS) collaborative science initiative …
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A More Intuitive Phytozome Interface
… of 250 plant genomes and has been under active development for over 5 years, provides users with the genome browsers, … attempted to make sure users will continue to have straightforward access to all the data in Phytozome v12, and that … building high performance user interfaces and backend data systems. Trying to maintain v12’s codebase and legacy data …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… the ability to break down hardy plant cell walls and therefore hold clues to how humans could do the same on an … microbes are no exception. Back in 2011, JGI-supported researchers published a paper in the journal Science. It … head of the Hess Lab at UC Davis. “It was a really huge effort in tool development and … that was really the …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… a chemical and biological engineer at the University of California Santa Barbara. So plants don’t break down without a … that biomass could serve as the starting material for a wide range of fuels and chemicals. To get to that … enzymes. They found many enzymes that outperformed industry standards.  A year later, her team used …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… event will bring together researchers across major ecosystems and disciplines who are developing and applying … of standardized fabricated ecosystems (EcoFABs) designed for precise manipulation and reproducible experimentation of … we will explore cutting-edge advancements in constructing, modeling, and applying these engineered ecosystems across …
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Three Join the JGI User Executive Committee
… Northwest National Laboratory, Chris Schadt of Oak Ridge National Laboratory and Elizabeth “Lizzy” Wilbanks of the University of California, Santa Barbara. They join eight other JGI users … base, including both university and national laboratory researchers. This will help the JGI shape its programs, …
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Six join FICUS program in 2026
… to welcome six to the Facilities Integrating Collaborations for User Facilities (FICUS) program for fiscal year 2026, in … The FICUS program is designed to encourage and enable researchers to more easily integrate the expertise and … can also request access to the Bio-SANS beamline at Oak Ridge National Laboratory, the Advanced Photon Source at …
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JGI@25: Roots of a Mutualist Relationship
… challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was published in the journal … from looking at single organisms to applying a broader ecosystem perspective, involving more multidisciplinary teams. … also paved the way for a longstanding collaboration between researchers at the JGI and the French National Institute for …
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