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Identifying the Microbial Cleanup Crew at a Superfund Site
… site. The chemical PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via leakage from a local dry-cleaner. Researchers  identified two … process, researchers collected microbial samples from wells at the site in 2007, 2009, and 2010. DNA was …
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Effects of Polar Light Cycle on Microbial Food Web
… with the seasons. The Science Light-harvesting bacteria (phototrophs) in Antarctica’s Ace Lake defy the norm when it … other Antarctic lakes and the nearby Southern Ocean shift from phototrophs to archaea when sunlight becomes scant, Ace … offers new clues into a unique environment in the natural world. The Impact From the polar regions to the deep ocean, …
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User Support
Management Office carries out a number of activities to facilitate world-class science. DOE JGI Project Managers collaborate … specific milestones, either by automated emails or emails from your Project Manager. Your Project Manager will also …
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MeCorS: Metagenome-enabled error correction of single cell sequencing reads
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Meraculous: De Novo Genome Assembly with Short Paired-End Reads
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BBMerge – Accurate paired shotgun read merging via overlap
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The Power of One, Amplified
… single cell genomics by collecting nearly 500 single cells from a single low diversity hot spring sediment sample. … showed that single cell genomics can add significant value to the other commonly used culture-independent sequencing … Danielle Goudeau and Rex Malmstrom of the JGI’s Microscale Applications group . Cells were randomly sorted, whole …
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Draft genome sequences of Arthrobacter sp. AZCC_0090 and Mycobacterium sp. AZCC_0083 isolated from oligotrophic subsurface forest soil in the Santa Catalina mountains of Southern Arizona
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
Science Program. Fashioning DNA outside a cell is key to interrogating what genes do, how they work, and applying … research efforts are accelerating the transition into real-world applications,” says Michael Köpke, the vice … fostering academia-industry collaborations.” A third story from the issue — Machine learning-based prediction of …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… that showcase our collaborations and capabilities to enable great science that will help solve energy and … among other conditions. While scientists around the world were busy sequencing the human genome, an arms race … years. The DOE brought together the people and resources from these three national labs to form the DOE Joint Genome …
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Complete Genome Sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
Puerto Nuevo is a small town along the Baja California coastline … interactions. Cone snail venom has a number of applications, including pain relief. The microbes in cone … found informatics to be intimidating. That first exposure from great interactions with Dr. Ben Cole and Dr. Axel Visel …
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