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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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High‐resolution genetic maps of Eucalyptus improve Eucalyptus grandis genome assembly
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Nikos Kyrpides
… Camargo AP. et al. (2023) Identification of mobile genetic elements with geNomad. Nat Biotechnol . Epub. Neri … of Human Microbiomes Reveal Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… Undergraduate Interns Andrew Lin and mentor Vy Duong, Understanding Key Genes in Photosynthesis Ravikiran … mentor Bryce Foster, Benchmarking Bioinformatics Tools for Sequence Similarity Searching Morgan Lavenstein Bendall and … Prediction to Annotate Novel Viruses: the Case of Polintoviruses Josue Duque and mentor Miguel Romero, …
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High-resolution genetic mapping of allelic variants associated with cell wall chemistry in Populus
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Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism
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JGI on the 2021 Highly Cited Researchers List
… with a reference switchgrass genome to associate climate adaptations with switchgrass biology. The information could … in natural ecosystems, and functionally explore viral genetic diversity toward innovative biotechnological and … the NeLLi 2021 Symposium: From New Lineages of Life to New Functions. The seminars focus on experimental innovations, …
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Tina Clarke
… University. Early on, Ms. Clarke knew the importance of understanding human and group behaviors as her role in HR … Era of Networks (Sybase Acquired Company), Pacheco, CA HR Generalist, 1999 – 2000 TriNet VCO, San Leandro, CA HR Generalist  1997 – 1999 …
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JGI@25: From Life at the Extremes to Editing Genomes
… refine and improve the process of finding novel Cas genes and CRISPR systems. The collaboration has resulted in … can target single-stranded DNA. Such proteins have been adapted for therapeutic application development by Mammoth … Banfield. (Banfield’s recounting of that first – and subsequent – meetings is here .) Working with the JGI, Banfield …
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Tracking the Origins of Methane-Producing Microbes
… methanogenic archaea use one of three pathways for methanogenesis: hydrogen-dependent and CO2-reducing, or … mini-metagenomics to these samples by sorting the microbes into small pools of cells that were then sequenced separately. From these samples, 111 … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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iPHoP: A Matchmaker for Phages and their Hosts
… any host will do. It must be a specific host the virus has adapted to commandeer. For bacteriophage viruses, these hosts … are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these viruses … iPHoP program brings several of these approaches together into the same workflow, then uses a machine-learning model …
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Yasuo Yoshikuni
… Shen et al., Mitochondrial ATP generation is more proteome efficient than glycolysis., … characterization of a soil viral auxiliary metabolic gene product - a functional chitosanase., Nature … ACS Central Science , 2022 Macdonald et al., A Synthetic Gene Library Yields a Previously Unknown Glycoside …
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